| Low density lipoprotein receptor |
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PDB rendering based on 1ajj.
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| Available structures |
| PDB |
Ortholog search: PDBe, RCSB |
| List of PDB id codes |
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1AJJ, 1D2J, 1F5Y, 1F8Z, 1HJ7, 1HZ8, 1I0U, 1IJQ, 1LDL, 1LDR, 1LRX, 1N7D, 1XFE, 2FCW, 2KRI, 2LGP, 2M7P, 2MG9, 2W2M, 2W2N, 2W2O, 2W2P, 2W2Q, 3BPS, 3GCW, 3GCX, 3M0C, 3P5B, 3P5C, 3SO6, 4NE9
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| Identifiers |
| Symbols |
LDLR ; FH; FHC; LDLCQ2 |
| External IDs |
OMIM: 606945 MGI: 96765 HomoloGene: 55469 ChEMBL: 3311 GeneCards: LDLR Gene |
| Gene ontology |
| Molecular function |
• glycoprotein binding
• low-density lipoprotein receptor activity
• calcium ion binding
• protein binding
• low-density lipoprotein particle binding
• very-low-density lipoprotein particle receptor activity
• clathrin heavy chain binding
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| Cellular component |
• lysosome
• early endosome
• late endosome
• Golgi apparatus
• plasma membrane
• integral component of plasma membrane
• coated pit
• external side of plasma membrane
• cell surface
• endosome membrane
• membrane
• basolateral plasma membrane
• clathrin-coated endocytic vesicle membrane
• low-density lipoprotein particle
• receptor complex
• apical part of cell
• PCSK9-LDLR complex
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| Biological process |
• retinoid metabolic process
• lipid metabolic process
• endocytosis
• receptor-mediated endocytosis
• phototransduction, visible light
• cholesterol metabolic process
• positive regulation of triglyceride biosynthetic process
• regulation of phosphatidylcholine catabolic process
• phospholipid transport
• viral process
• intestinal cholesterol absorption
• cholesterol transport
• low-density lipoprotein particle clearance
• lipoprotein metabolic process
• lipoprotein catabolic process
• cholesterol homeostasis
• small molecule metabolic process
• cholesterol import
• regulation of cholesterol homeostasis
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| Sources: Amigo / QuickGO |
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| RNA expression pattern |
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| More reference expression data |
| Orthologs |
| Species |
Human |
Mouse |
| Entrez |
3949 |
16835 |
| Ensembl |
ENSG00000130164 |
ENSMUSG00000032193 |
| UniProt |
P01130 |
P35951 |
| RefSeq (mRNA) |
NM_000527 |
NM_001252658 |
| RefSeq (protein) |
NP_000518 |
NP_001239587 |
| Location (UCSC) |
Chr 19:
11.09 – 11.13 Mb |
Chr 9:
21.72 – 21.75 Mb |
| PubMed search |
[1] |
[2] |
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The Low-Density Lipoprotein (LDL) Receptor is a mosaic protein of 839 amino acids (after removal of 21-amino acid signal peptide)[1] that mediates the endocytosis of cholesterol-rich LDL. It is a cell-surface receptor that recognizes the apoprotein B100, which is embedded in the outer phospholipid layer of LDL particles. The receptor also recognizes the apoE protein found in chylomicron remnants and VLDL remnants (IDL). In humans, the LDL receptor protein is encoded by the LDLR gene.[2][3] It belongs to the Low density lipoprotein receptor gene family.[4]
Michael S. Brown and Joseph L. Goldstein were awarded the 1985 Nobel Prize in Physiology or Medicine for their identification of the Low Density Lipoprotein (LDL) Receptor[5] and its relation to cholesterol metabolism and familial hypercholesterolemia.[6]
Contents
- 1 Clinical significance
- 2 Function
- 3 Interactive pathway map
- 4 Structure
- 5 Mutations
- 6 References
- 7 Further reading
- 8 External links
Clinical significance
LDL is directly involved in the development of atherosclerosis, due to accumulation of LDL-cholesterol in the blood. Atherosclerosis is the process responsible for the majority of cardiovascular diseases.
Hyperthyroidism may be associated with hypocholesterolaemia via upregulation of the LDL receptor, and hypothyroidism with the converse
Function
LDL receptor complexes are present in clathrin-coated pits (or buds) on the cell surface, which when bound to LDL-cholesterol via adaptin, are pinched off to form clathrin-coated vesicles inside the cell. This allows LDL-cholesterol to be bound and internalized in a process known as endocytosis and prevents the LDL just diffusing around the membrane surface. This occurs in all nucleated cells (not erythrocytes), but mainly in the liver which removes ~70% of LDL from the circulation.
Once the coated vesicle is internalized it will shed its clathrin coat and will fuse with an acidic late endosome. The change in pH causes a conformational change in the receptor that releases the bound LDL particle. The receptors are then either destroyed or they can be recycled via the endocytic cycle back to the surface of the cell where the neutral pH will cause the receptor to revert to its native conformation ready to receive another LDL particle.
Synthesis of receptors in the cell is regulated by the level of free intracellular cholesterol; if it is in excess for the needs of the cell then the transcription of the receptor gene will be inhibited. LDL receptors are translated by ribosomes on the endoplasmic reticulum and are modified by the Golgi apparatus before travelling in vesicles to the cell surface.
Interactive pathway map
Click on genes, proteins and metabolites below to link to respective articles. [§ 1]
[[File:
|{{{bSize}}}px|alt=Statin Pathway edit]]
File:StatinPathway_WP430.png
Statin Pathway edit
- ^ The interactive pathway map can be edited at WikiPathways: "Statin_Pathway_WP430".
Structure
Gene
The gene coding the LDL receptor is split into 18 exons. Exon 1 contains a signal sequence that localises the receptor to the endoplasmic reticulum for transport to the cell surface. Beyond this, exons 2-6 code the ligand binding region; 7-14 code the EGF domain; 15 codes the oligosaccharide rich region; 16 (and some of 17) code the membrane spanning region; and 18 (with the rest of 17) code the cytosolic domain. The LDL receptor can be described as a chimeric protein. It is made up of a number of functionally distinct domains that can function independently of each other.
Protein
[7][8][9]
The N-terminal domain of the LDL receptor, which is responsible for ligand binding, is composed of seven sequence repeats (~50% identical). Each repeat, referred to as a class A repeat or LDL-A, contains roughly 40 amino acids, including 6 cysteine residues that form disulfide bonds within the repeat. Additionally, each repeat has highly conserved acidic residues which it uses to coordinate a single calcium ion in an octahedral lattice. Both the disulfide bonds and calcium coordination are necessary for the structural integrity of the domain during the receptor's repeated trips to the highly acidic interior of the endosome. The exact mechanism of interaction between the class A repeats and ligand (LDL) is unknown, but it is thought that the repeats act as "grabbers" to hold the LDL. Binding of ApoB requires repeats 2-7 while binding ApoE requires only repeat 5 (thought to be the ancestral repeat).
Next to the ligand binding domain is an epidermal growth factor (EGF) precursor homology domain (EGFP domain). This shows approximately 30% homology with the EGF precursor gene. There are three "growth factor" repeats; A, B and C. A and B are closely linked while C is separated by the YWTD repeat region, which adopts a beta-propeller conformation (LDL-R class B domain). It is thought that this region is responsible for the pH-dependent conformational shift that causes bound LDL to be released in the endosome.
A third domain of the protein is rich in O-linked oligosaccharides but appears to show little function. Knockout experiments have confirmed that no significant loss of activity occurs without this domain. It has been speculated that the domain may have ancestrally acted as a spacer to push the receptor beyond the extracellular matrix.
The single transmembrane domain of 22 (mostly) non-polar residues crosses the plasma membrane in a single alpha helix.
The cytosolic C-terminal domain contains ~50 amino acids, including a signal sequence important for localizing the receptors to clathrin-coated pits and for triggering receptor-mediated endocytosis after binding. Portions of the cytosolic sequence have been found in other lipoprotein receptors, as well as in more distant receptor relatives.
Mutations
Mutations in the gene encoding the LDL receptor are known to cause familial hypercholesterolaemia.
There are 5 broad classes of mutation of the LDL receptor.[10]
- Class 1 mutations affect the synthesis of the receptor in the endoplasmic reticulum (ER).
- Class 2 mutations prevent proper transport to the Golgi body needed for modifications to the receptor.
- e.g. a truncation of the receptor protein at residue number 660 leads to domains 3,4 and 5 of the EGF precursor domain being missing. This precludes the movement of the receptor from the ER to the Golgi, and leads to degradation of the receptor protein.
- Class 3 mutations stop the binding of LDL to the receptor.
- e.g. repeat 6 of the ligand binding domain (N-terminal, extracellular fluid) is deleted.
- Class 4 mutations inhibit the internalisation of the receptor-ligand complex.
- e.g. "JD" mutant results from a single point mutation in the NPVY domain (C-terminal, cytosolic; Y residue converted to a C, residue number 807). This domain recruits clathrin and other proteins responsible for the endocytosis of LDL, therefore this mutation inhibits LDL internalization.
- Class 5 mutations give rise to receptors that cannot recycle properly. This leads to a relatively mild phenotype as receptors are still present on the cell surface (but all must be newly synthesised).
References
- ^ Südhof TC, Goldstein JL, Brown MS, Russell DW (May 1985). "The LDL receptor gene: a mosaic of exons shared with different proteins". Science 228 (4701): 815–22. doi:10.1126/science.2988123. PMID 2988123.
- ^ Francke U, Brown MS, Goldstein JL (May 1984). "Assignment of the human gene for the low density lipoprotein receptor to chromosome 19: synteny of a receptor, a ligand, and a genetic disease". Proc. Natl. Acad. Sci. U.S.A. 81 (9): 2826–30. doi:10.1073/pnas.81.9.2826. PMC: 345163. PMID 6326146.
- ^ Lindgren V, Luskey KL, Russell DW, Francke U (December 1985). "Human genes involved in cholesterol metabolism: chromosomal mapping of the loci for the low density lipoprotein receptor and 3-hydroxy-3-methylglutaryl-coenzyme A reductase with cDNA probes". Proc. Natl. Acad. Sci. U.S.A. 82 (24): 8567–71. doi:10.1073/pnas.82.24.8567. PMC: 390958. PMID 3866240.
- ^ Nykjaer A, Willnow TE (June 2002). "The low-density lipoprotein receptor gene family: a cellular Swiss army knife?". Trends Cell Biol. 12 (6): 273–80. doi:10.1016/S0962-8924(02)02282-1. PMID 12074887.
- ^ "The Nobel Prize in Physiology or Medicine 1985" (Press release). The Royal Swedish Academy of Science. 1985. Retrieved 2010-07-01.
- ^ Brown MS, Goldstein JL (1984). "How LDL Receptors Influence Cholesterol and Atherosclerosis". Scientific American 251 (3): 52–60. doi:10.1038/scientificamerican0984-52. PMID 6390676.
- ^ Yamamoto T, Davis CG, Brown MS, Schneider WJ, Casey ML, Goldstein JL, Russell DW (November 1984). "The human LDL receptor: a cysteine-rich protein with multiple Alu sequences in its mRNA". Cell 39 (1): 27–38. doi:10.1016/0092-8674(84)90188-0. PMID 6091915.
- ^ Brown M, Herz J, Goldstein J (August 1997). "LDL-receptor structure: Calcium cages, acid baths and recycling receptors". Nature 388: 629–30. doi:10.1038/41672.
- ^ Gent J, Braakman I (October 2004). "Low-density lipoprotein receptor structure and folding". Cell. Mol. Life Sci. 61 (19-20): 2461–70. doi:10.1007/s00018-004-4090-3. PMID 15526154.
- ^ "Low Density Lipoprotein Receptor". LOVD v.1.1.0 - Leiden Open Variation Database.
Further reading
- Brown MS, Goldstein JL (1979). "Receptor-mediated endocytosis: insights from the lipoprotein receptor system.". Proc. Natl. Acad. Sci. U.S.A. 76 (7): 3330–7. doi:10.1073/pnas.76.7.3330. PMC: 383819. PMID 226968.
- Hobbs HH, Brown MS, Goldstein JL (1993). "Molecular genetics of the LDL receptor gene in familial hypercholesterolemia.". Hum. Mutat. 1 (6): 445–66. doi:10.1002/humu.1380010602. PMID 1301956.
- Fogelman AM, Van Lenten BJ, Warden C, et al. (1989). "Macrophage lipoprotein receptors.". J. Cell Sci. Suppl. 9: 135–49. PMID 2855802.
- Barrett PH, Watts GF (2002). "Shifting the LDL-receptor paradigm in familial hypercholesterolemia: novel insights from recent kinetic studies of apolipoprotein B-100 metabolism.". Atherosclerosis Supplements 2 (3): 1–4. doi:10.1016/S1567-5688(01)00012-5. PMID 11923121.
- May P, Bock HH, Herz J (2003). "Integration of endocytosis and signal transduction by lipoprotein receptors.". Sci. STKE 2003 (176): PE12. doi:10.1126/stke.2003.176.pe12. PMID 12671190.
- Gent J, Braakman I (2004). "Low-density lipoprotein receptor structure and folding.". Cell. Mol. Life Sci. 61 (19-20): 2461–70. doi:10.1007/s00018-004-4090-3. PMID 15526154.
External links
- Description of LDL receptor pathway at the Brown - Goldstein Laboratory webpage
- LDL Receptor at the US National Library of Medicine Medical Subject Headings (MeSH)
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PDB gallery
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1ajj: LDL RECEPTOR LIGAND-BINDING MODULE 5, CALCIUM-COORDINATING
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1d2j: LDL RECEPTOR LIGAND-BINDING MODULE 6
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1f5y: NMR STRUCTURE OF A CONCATEMER OF THE FIRST AND SECOND LIGAND-BINDING MODULES OF THE HUMAN LDL RECEPTOR
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1f8z: NMR STRUCTURE OF THE SIXTH LIGAND-BINDING MODULE OF THE LDL RECEPTOR
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1hj7: NMR STUDY OF A PAIR OF LDL RECEPTOR CA2+ BINDING EPIDERMAL GROWTH FACTOR-LIKE DOMAINS, 20 STRUCTURES
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1hz8: SOLUTION STRUCTURE AND BACKBONE DYNAMICS OF A CONCATEMER OF EGF-HOMOLOGY MODULES OF THE HUMAN LOW DENSITY LIPOPROTEIN RECEPTOR
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1i0u: SOLUTION STRUCTURE AND BACKBONE DYNAMICS OF A CONCATEMER OF EGF-HOMOLOGY MODULES OF THE HUMAN LOW DENSITY LIPOPROTEIN RECEPTOR
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1ijq: Crystal Structure of the LDL Receptor YWTD-EGF Domain Pair
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1ldl: THREE-DIMENSIONAL STRUCTURE OF A CYSTEINE-RICH REPEAT FROM THE LOW-DENSITY LIPOPROTEIN RECEPTOR
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1ldr: SECOND REPEAT OF THE LDL RECEPTOR LIGAND-BINDING DOMAIN
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1n7d: Extracellular domain of the LDL receptor
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1xfe: Solution structure of the LA7-EGFA pair from the LDL receptor
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2fcw: Structure of a Complex Between the Pair of the LDL Receptor Ligand-Binding Modules 3-4 and the Receptor Associated Protein (RAP).
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Lipids: lipoprotein particle metabolism
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| Lipoprotein particle classes and subclasses |
- delivery of TGs: Chylomicron
- VLDL
- delivery of C and CE: IDL
- LDL
- lb LDL
- sd LDL
- Lp(a)
- HDL
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| Apolipoproteins |
- APOA
- APOB
- APOC
- APOD
- APOE
- APOH
- SAA
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| Extracellular enzymes |
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| Lipid transfer proteins |
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| Cell surface receptors |
- IDL: LRP
- LRP1
- LRP1B
- LRP2
- LRP3
- LRP4
- LRP5
- LRP5L
- LRP6
- LRP8
- LRP10
- LRP11
- LRP12
- LDL: LDLR
- LRPAP1
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| ATP-binding cassette transporter |
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