- 関
- interferon regulatory factor-3
WordNet
- the 9th letter of the Roman alphabet (同)i
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- iodineの化学記号
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出典(authority):フリー百科事典『ウィキペディア(Wikipedia)』「2015/07/12 16:33:31」(JST)
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Interferon regulatory factor 3 |
PDB rendering based on 1j2f.
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Available structures |
PDB |
Ortholog search: PDBe, RCSB |
List of PDB id codes |
1J2F, 1QWT, 1T2K, 1ZOQ, 2O61, 2O6G, 2PI0, 3A77, 3QU6
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Identifiers |
Symbol |
IRF3 |
External IDs |
OMIM: 603734 MGI: 1859179 HomoloGene: 1208 GeneCards: IRF3 Gene |
Gene ontology |
Molecular function |
• regulatory region DNA binding
• DNA binding
• sequence-specific DNA binding transcription factor activity
• transcription cofactor activity
• protein binding
• identical protein binding
• protein homodimerization activity
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Cellular component |
• nucleus
• nucleoplasm
• cytoplasm
• cytosol
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Biological process |
• toll-like receptor signaling pathway
• MyD88-independent toll-like receptor signaling pathway
• regulation of transcription, DNA-templated
• transcription from RNA polymerase II promoter
• apoptotic process
• cellular response to DNA damage stimulus
• viral process
• cytokine-mediated signaling pathway
• lipopolysaccharide-mediated signaling pathway
• negative regulation of type I interferon production
• positive regulation of type I interferon production
• positive regulation of interferon-alpha production
• positive regulation of interferon-beta production
• toll-like receptor 3 signaling pathway
• toll-like receptor 4 signaling pathway
• TRIF-dependent toll-like receptor signaling pathway
• MDA-5 signaling pathway
• positive regulation of I-kappaB kinase/NF-kappaB signaling
• response to exogenous dsRNA
• innate immune response
• type I interferon biosynthetic process
• positive regulation of cytokine secretion
• defense response to virus
• interferon-gamma-mediated signaling pathway
• type I interferon signaling pathway
• positive regulation of type I interferon-mediated signaling pathway
• cellular response to dsRNA
• macrophage apoptotic process
• programmed necrotic cell death
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Sources: Amigo / QuickGO |
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RNA expression pattern |
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More reference expression data |
Orthologs |
Species |
Human |
Mouse |
Entrez |
3661 |
54131 |
Ensembl |
ENSG00000126456 |
ENSMUSG00000003184 |
UniProt |
Q14653 |
P70671 |
RefSeq (mRNA) |
NM_001197122 |
NM_016849 |
RefSeq (protein) |
NP_001184051 |
NP_058545 |
Location (UCSC) |
Chr 19:
49.66 – 49.67 Mb |
Chr 7:
45 – 45 Mb |
PubMed search |
[1] |
[2] |
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Interferon regulatory factor 3, also known as IRF3, is an interferon regulatory factor.[1]
Contents
- 1 Function
- 2 Interactions
- 3 References
- 4 Further reading
- 5 External links
Function
IRF3 is a member of the interferon regulatory transcription factor (IRF) family.[1] IRF3 was originally discovered as a homolog of IRF1 and IRF2. IRF3 has been further characterized and shown to contain several functional domains including a nuclear export signal, a DNA-binding domain, a C-terminal IRF association domain and several regulatory phosphorylation sites.[2] IRF3 is found in an inactive cytoplasmic form that upon serine/threonine phosphorylation forms a complex with CREBBP.[3] This complex translocates to the nucleus and activates the transcription of interferons alpha and beta, as well as other interferon-induced genes.[4]
IRF3 plays an important role in the innate immune system's response to viral infection.[5] Aggregated MAVS have been found to activate IRF3 dimerization.[6]
Signaling pathway of toll-like receptors. Dashed grey lines represent unknown associations
Interactions
IRF3 has been shown to interact with IRF7.[7]
References
- ^ a b Hiscott J, Pitha P, Genin P, Nguyen H, Heylbroeck C, Mamane Y et al. (1999). "Triggering the interferon response: the role of IRF-3 transcription factor". J. Interferon Cytokine Res. 19 (1): 1–13. doi:10.1089/107999099314360. PMID 10048763.
- ^ Lin R, Heylbroeck C, Genin P, Pitha PM, Hiscott J (Feb 1999). "Essential Role of Interferon Regulatory Factor 3 in Direct Activation of RANTES Chemokine Transcription". Mol Cell Biol 19 (2): 959–66. PMC 116027. PMID 9891032.
- ^ Yoneyama M, Suhara W, Fujita T (2002). "Control of IRF-3 activation by phosphorylation". J. Interferon Cytokine Res. 22 (1): 73–6. doi:10.1089/107999002753452674. PMID 11846977.
- ^ "Entrez Gene: IRF3 interferon regulatory factor 3".
- ^ Collins SE, Noyce RS, Mossman KL (Feb 2004). "Innate Cellular Response to Virus Particle Entry Requires IRF3 but Not Virus Replication". J Virol 78 (4): 1706–17. doi:10.1128/JVI.78.4.1706-1717.2004. PMC 369475. PMID 14747536.
- ^ Hou F, Sun L, Zheng H, Skaug B, Jiang QX, Chen ZJ (Aug 5, 2011). "MAVS Forms Functional Prion-Like Aggregates To Activate and Propagate Antiviral Innate Immune Response". Cell 146 (3): 448–61. doi:10.1016/j.cell.2011.06.041. PMC 3179916. PMID 21782231.
- ^ Au WC, Yeow WS, Pitha PM (Feb 2001). "Analysis of functional domains of interferon regulatory factor 7 and its association with IRF-3". Virology 280 (2): 273–82. doi:10.1006/viro.2000.0782. PMID 11162841.
Further reading
- Pitha PM, Au WC, Lowther W, Juang YT, Schafer SL, Burysek L et al. (1999). "Role of the interferon regulatory factors (IRFs) in virus-mediated signaling and regulation of cell growth". Biochimie 80 (8–9): 651–8. doi:10.1016/S0300-9084(99)80018-2. PMID 9865487.
- Yoneyama M, Suhara W, Fujita T (2002). "Control of IRF-3 activation by phosphorylation". J. Interferon Cytokine Res. 22 (1): 73–6. doi:10.1089/107999002753452674. PMID 11846977.
- Au WC, Moore PA, Lowther W, Juang YT, Pitha PM (1996). "Identification of a member of the interferon regulatory factor family that binds to the interferon-stimulated response element and activates expression of interferon-induced genes". Proc. Natl. Acad. Sci. U.S.A. 92 (25): 11657–61. doi:10.1073/pnas.92.25.11657. PMC 40461. PMID 8524823.
- Yoneyama M, Suhara W, Fukuhara Y, Fukuda M, Nishida E, Fujita T (1998). "Direct triggering of the type I interferon system by virus infection: activation of a transcription factor complex containing IRF-3 and CBP/p300". EMBO J. 17 (4): 1087–95. doi:10.1093/emboj/17.4.1087. PMC 1170457. PMID 9463386.
- Weaver BK, Kumar KP, Reich NC (1998). "Interferon Regulatory Factor 3 and CREB-Binding Protein/p300 Are Subunits of Double-Stranded RNA-Activated Transcription Factor DRAF1". Mol. Cell. Biol. 18 (3): 1359–68. PMC 108849. PMID 9488451.
- Lin R, Heylbroeck C, Pitha PM, Hiscott J (1998). "Virus-Dependent Phosphorylation of the IRF-3 Transcription Factor Regulates Nuclear Translocation, Transactivation Potential, and Proteasome-Mediated Degradation". Mol. Cell. Biol. 18 (5): 2986–96. PMC 110678. PMID 9566918.
- Ronco LV, Karpova AY, Vidal M, Howley PM (1998). "Human papillomavirus 16 E6 oncoprotein binds to interferon regulatory factor-3 and inhibits its transcriptional activity". Genes Dev. 12 (13): 2061–72. doi:10.1101/gad.12.13.2061. PMC 316980. PMID 9649509.
- Bellingham J, Gregory-Evans K, Gregory-Evans CY (1999). "Mapping of human interferon regulatory factor 3 (IRF3) to chromosome 19q13.3-13.4 by an intragenic polymorphic marker". Annals of Human Genetics 62 (Pt 3): 231–4. doi:10.1046/j.1469-1809.1998.6230231.x. PMID 9803267.
- Lowther WJ, Moore PA, Carter KC, Pitha PM (1999). "Cloning and functional analysis of the human IRF-3 promoter". DNA Cell Biol. 18 (9): 685–92. doi:10.1089/104454999314962. PMID 10492399.
- Kim T, Kim TY, Song YH, Min IM, Yim J, Kim TK (1999). "Activation of interferon regulatory factor 3 in response to DNA-damaging agents". J. Biol. Chem. 274 (43): 30686–9. doi:10.1074/jbc.274.43.30686. PMID 10521456.
- Kumar KP, McBride KM, Weaver BK, Dingwall C, Reich NC (2000). "Regulated Nuclear-Cytoplasmic Localization of Interferon Regulatory Factor 3, a Subunit of Double-Stranded RNA-Activated Factor 1". Mol. Cell. Biol. 20 (11): 4159–68. doi:10.1128/MCB.20.11.4159-4168.2000. PMC 85785. PMID 10805757.
- Suhara W, Yoneyama M, Iwamura T, Yoshimura S, Tamura K, Namiki H et al. (2000). "Analyses of virus-induced homomeric and heteromeric protein associations between IRF-3 and coactivator CBP/p300". J. Biochem. 128 (2): 301–7. doi:10.1093/oxfordjournals.jbchem.a022753. PMID 10920266.
- Servant MJ, ten Oever B, LePage C, Conti L, Gessani S, Julkunen I et al. (2001). "Identification of distinct signaling pathways leading to the phosphorylation of interferon regulatory factor 3". J. Biol. Chem. 276 (1): 355–63. doi:10.1074/jbc.M007790200. PMID 11035028.
- Smith EJ, Marié I, Prakash A, García-Sastre A, Levy DE (2001). "IRF3 and IRF7 phosphorylation in virus-infected cells does not require double-stranded RNA-dependent protein kinase R or Ikappa B kinase but is blocked by Vaccinia virus E3L protein". J. Biol. Chem. 276 (12): 8951–7. doi:10.1074/jbc.M008717200. PMID 11124948.
- Au WC, Yeow WS, Pitha PM (2001). "Analysis of functional domains of interferon regulatory factor 7 and its association with IRF-3". Virology 280 (2): 273–82. doi:10.1006/viro.2000.0782. PMID 11162841.
- Barnes BJ, Moore PA, Pitha PM (2001). "Virus-specific activation of a novel interferon regulatory factor, IRF-5, results in the induction of distinct interferon alpha genes". J. Biol. Chem. 276 (26): 23382–90. doi:10.1074/jbc.M101216200. PMID 11303025.
- Mach CM, Hargrove BW, Kunkel GR (2002). "The Small RNA gene activator protein, SphI postoctamer homology-binding factor/selenocysteine tRNA gene transcription activating factor, stimulates transcription of the human interferon regulatory factor-3 gene". J. Biol. Chem. 277 (7): 4853–8. doi:10.1074/jbc.M108308200. PMID 11724783.
- Morin P, Bragança J, Bandu MT, Lin R, Hiscott J, Doly J et al. (2002). "Preferential binding sites for interferon regulatory factors 3 and 7 involved in interferon-A gene transcription". J. Mol. Biol. 316 (5): 1009–22. doi:10.1006/jmbi.2001.5401. PMID 11884139.
- Dang O, Navarro L, Anderson K, David M (2004). "Cutting edge: anthrax lethal toxin inhibits activation of IFN-regulatory factor 3 by lipopolysaccharide". J. Immunology 172 (2): 747–51. doi:10.4049/jimmunol.172.2.747. PMID 14707042.
External links
- Interferon Regulatory Factor-3 at the US National Library of Medicine Medical Subject Headings (MeSH)
- FactorBook IRF3
PDB gallery
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1j2f: X-ray crystal structure of IRF-3 and its functional implications
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1qwt: Auto-inhibitory interferon regulation factor-3 (IRF3) transactivation domain
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1t2k: Structure Of The DNA Binding Domains Of IRF3, ATF-2 and Jun Bound To DNA
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Cell signaling: carrier proteins: signal transducing adaptor proteins
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JAK-STAT |
- see JAK-STAT signaling pathway
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Growth factor receptor-bound protein |
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Other |
- 14-3-3
- Caveolin
- Cortactin
- Death-inducing signaling complex
- Paxillin
- MYD88
- SMAD
- TRAF
- TRAF1
- TRAF2
- TRAF3
- TRAF4
- TRAF5
- TRAF6)
- BIN1
- SH3BP2
- LDB3
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Index of signal transduction
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Description |
- Intercellular
- neuropeptides
- growth factors
- cytokines
- hormones
- Cell surface receptors
- ligand-gated
- enzyme-linked
- G protein-coupled
- immunoglobulin superfamily
- integrins
- neuropeptide
- growth factor
- cytokine
- Intracellular
- adaptor proteins
- GTP-binding
- MAP kinase
- Calcium signaling
- Lipid signaling
- Pathways
- hedgehog
- Wnt
- TGF beta
- MAPK ERK
- notch
- JAK-STAT
- apoptosis
- hippo
- TLR
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Signaling pathway: TLR signaling pathway
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Receptor |
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Other external |
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Internal |
- adaptor: MYD88
- TRIF
- TIRAP
- TRAF6
- TOLLIP
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Index of signal transduction
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Description |
- Intercellular
- neuropeptides
- growth factors
- cytokines
- hormones
- Cell surface receptors
- ligand-gated
- enzyme-linked
- G protein-coupled
- immunoglobulin superfamily
- integrins
- neuropeptide
- growth factor
- cytokine
- Intracellular
- adaptor proteins
- GTP-binding
- MAP kinase
- Calcium signaling
- Lipid signaling
- Pathways
- hedgehog
- Wnt
- TGF beta
- MAPK ERK
- notch
- JAK-STAT
- apoptosis
- hippo
- TLR
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JAK-STAT signaling pathway
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Ligand |
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Cytokine receptor |
- Type I cytokine receptor
- Type II cytokine receptor
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Janus kinase |
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Adaptor proteins |
STAT
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- STAT1
- STAT2
- STAT3
- STAT4
- STAT5
- STAT6
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PIAS
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SOCS
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IRF
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- IRF1
- IRF2
- IRF3
- IRF4
- IRF5
- IRF6
- IRF7
- IRF8
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Index of signal transduction
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Description |
- Intercellular
- neuropeptides
- growth factors
- cytokines
- hormones
- Cell surface receptors
- ligand-gated
- enzyme-linked
- G protein-coupled
- immunoglobulin superfamily
- integrins
- neuropeptide
- growth factor
- cytokine
- Intracellular
- adaptor proteins
- GTP-binding
- MAP kinase
- Calcium signaling
- Lipid signaling
- Pathways
- hedgehog
- Wnt
- TGF beta
- MAPK ERK
- notch
- JAK-STAT
- apoptosis
- hippo
- TLR
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UpToDate Contents
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English Journal
- The impact of interferon-regulatory factors to macrophage differentiation and polarization into M1 and M2.
- Chistiakov DA1, Myasoedova VA2, Revin VV3, Orekhov AN2, Bobryshev YV4.
- Immunobiology.Immunobiology.2018 Jan;223(1):101-111. doi: 10.1016/j.imbio.2017.10.005. Epub 2017 Oct 5.
- PMID 29032836
- MiR-525-3p mediates antiviral defense to rotavirus infection by targeting nonstructural protein 1.
- Tian Z1, Zhang J1, He H1, Li J2, Wu Y3, Shen Z4.
- Biochimica et biophysica acta.Biochim Biophys Acta.2017 Dec;1863(12):3212-3225. doi: 10.1016/j.bbadis.2017.09.003. Epub 2017 Sep 7.
- PMID 28890396
- Endoplasmic Reticulum Transmembrane Proteins ZDHHC1 and STING Both Act as Direct Adaptors for IRF3 Activation in Teleost.
- Xu X1, Li M1, Wu Z1, Wang H1, Wang L1, Huang K1, Liu X1, Hou Q1, Lin G1, Hu C2.
- Journal of immunology (Baltimore, Md. : 1950).J Immunol.2017 Nov 15;199(10):3623-3633. doi: 10.4049/jimmunol.1700750. Epub 2017 Oct 18.
- PMID 29046345
Japanese Journal
- Virology : Analysis of a pair of END⁺ and END⁻ viruses derived from the same bovine viral diarrhea virus stock reveals the amino acid determinants in N[pro] responsible for inhibition of type I interferon production
- KOZASA Takashi,ABE Yuri,MITSUHASHI Kazuya [他],TAMURA Tomokazu,AOKI Hiroshi,ISHIMARU Masatoshi,NAKAMURA Shigeyuki,OKAMATSU Masatoshi,KIDA Hiroshi,SAKODA Yoshihiro
- Journal of Veterinary Medical Science 77(5), 511-518, 2015
- … The Exaltation of Newcastle disease virus (END) phenomenon is induced by the inhibition of type I interferon in pestivirus-infected cells in vitro, via proteasomal degradation of cellular interferon regulatory factor (IRF)-3 with the property of the viral autoprotease protein N-pro. …
- NAID 130005071888
- Persistent prion infection disturbs the function of Oct-1, resulting in the down-regulation of murine interferon regulatory factor-3
- Homma Takujiro,Ishibashi Daisuke,Nakagaki Takehiro,Fuse Takayuki,Sano Kazunori,Satoh Katsuya,Atarashi Ryuichiro,Nishida Noriyuki
- Scientific Reports 4, 6006, 2014-08-08
- … As a prompt response against invasion of various viruses, interferon regulatory factor-3 (IRF-3) is initially phosphorylated to become activated and upregulates mainly Type I Interferons (IFN-I) in most cell types. … We previously reported that IRF-3-dependent host innate immune responses partially interfere in infection of prions. …
- NAID 120005477044
- MAVS-dependent IRF3/7 bypass of interferon p-induction restricts the response to measles infection in CD150Tg mouse bone marrow-derived dendritic cells
- Takaki Hiromi,Honda Kenya,Atarashi Koji,Kobayashi Fukiko,Ebihara Takashi,Oshiumi Hiroyuki,Matsumoto Misako,Shingai Masashi,Seya Tsukasa
- Molecular immunology 57(2), 100-109, 2014-02
- … RNA virus infection usually allows cells to generate double-stranded RNA and induce activation of IFN regulatory factor (IRF) 3/7 transcription factors, leading to the production of type I IFN through the retinoic acid-inducible gene I (RIG-I)/melanoma differentiation-associated gene 5 (MDA5)-mitochondrial antiviral signaling protein (MAVS) pathway. … In mouse experimental BMDCs models, we found CD150Tg/Mavs(-/-)BMDCs, but not CD150Tg/Irf3(-/-)/Irf7-/-BMDCs, permissive to MV. …
- NAID 120005372324
Related Links
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Related Pictures
★リンクテーブル★
[★]
インターフェロン調節因子-3
- 関
- IRF-3
[★]
- 英
- interferon regulatory factor-3、IRF-3
[★]
[★]
- 関
- interferon regulatory factor
[★]