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De novo assembly and characterization of the spleen transcriptome of common carp (Cyprinus carpio) using Illumina paired-end sequencing.

Li G1, Zhao Y2, Liu Z3, Gao C4, Yan F5, Liu B6, Feng J7.
Fish & shellfish immunology.Fish Shellfish Immunol.2015 Jun;44(2):420-9. doi: 10.1016/j.fsi.2015.03.014. Epub 2015 Mar 21.
Common carp (Cyprinus carpio) is one of the most important aquacultured species of the family Cyprinidae, and breeding this species for disease resistance is becoming more and more important. However, at the genome or transcriptome levels, study of the immunogenetics of disease resistance in the com
PMID 25804493

De novo sequencing, assembly and analysis of salivary gland transcriptome of Haemaphysalis flava and identification of sialoprotein genes.

Xu XL1, Cheng TY2, Yang H3, Yan F4, Yang Y4.
Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases.Infect Genet Evol.2015 Jun;32:135-42. doi: 10.1016/j.meegid.2015.03.010. Epub 2015 Mar 14.
Saliva plays an important role in feeding and pathogen transmission, identification and analysis of tick salivary gland (SG) proteins is considered as a hot spot in anti-tick researching area. Herein, we present the first description of SG transcriptome of Haemaphysalis flava using next-generation s
PMID 25784566

Adipokine levels during the first or early second trimester of pregnancy and subsequent risk of gestational diabetes mellitus: A systematic review.

Bao W1, Baecker A2, Song Y3, Kiely M1, Liu S4, Zhang C5.
Metabolism: clinical and experimental.Metabolism.2015 Jun;64(6):756-64. doi: 10.1016/j.metabol.2015.01.013. Epub 2015 Jan 29.
OBJECTIVE: We aimed to systematically review available literature linking adipokines to gestational diabetes mellitus (GDM) for a comprehensive understanding of the roles of adipokines in the development of GDM.METHODS: We searched PubMed/MEDLINE and EMBASE databases for published studies on adipoki
PMID 25749468

A parameterisable and scalable Smith-Waterman algorithm implementation on CUDA-compatible GPUs

Ling Cheng,Benkrid Khaled,Hamada Tsuyoshi
2009 IEEE 7th Symposium on Application Specific Processors, 94-100, 2009-07
… The proposed technique resulted in up to 4.2 GCUPS (Giga Cell Updates per Second) performance when tested against the SWISS-PROT protein database, which is up to 15 times faster than a equivalent optimised CPU-only implementation running on a Pentium4 3.4GHz desktop computer. …
NAID 120001759341

Support Vector Machine Prediction of N- and O-glycosylation Sites Using Whole Sequence Information and Subcellular Localization

Kenta Sasaki,Nobuyoshi Nagamine,Yasubumi Sakakibara
情報処理学会論文誌. バイオ情報学 2, 25-35, 2009-03-24
… About half of all proteins are estimated to be glycosylated based on the SWISS-PROT database. …
NAID 110007990336