| Tumor necrosis factor (ligand) superfamily, member 13b |
PDB rendering based on 1jh5. |
| Available structures |
| PDB |
Ortholog search: PDBe, RCSB |
| List of PDB id codes |
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1JH5, 1KD7, 1KXG, 1OQD, 1OQE, 1OSG, 1OTZ, 3V56
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| Identifiers |
| Symbols |
TNFSF13B; BAFF; BLYS; CD257; DTL; TALL-1; TALL1; THANK; TNFSF20; ZTNF4 |
| External IDs |
OMIM: 603969 MGI: 1344376 HomoloGene: 48443 GeneCards: TNFSF13B Gene |
| Gene Ontology |
| Molecular function |
• receptor binding
• cytokine activity
• tumor necrosis factor receptor binding
• protein binding
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| Cellular component |
• extracellular space
• plasma membrane
• integral to membrane
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| Biological process |
• B cell homeostasis
• positive regulation of germinal center formation
• immune response
• signal transduction
• cell proliferation
• positive regulation of cell proliferation
• positive regulation of B cell proliferation
• T cell costimulation
• B cell costimulation
• positive regulation of T cell proliferation
• immunoglobulin secretion
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| Sources: Amigo / QuickGO |
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| Orthologs |
| Species |
Human |
Mouse |
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| Entrez |
10673 |
24099 |
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| Ensembl |
ENSG00000102524 |
ENSMUSG00000031497 |
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| UniProt |
Q9Y275 |
Q9WU72 |
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| RefSeq (mRNA) |
NM_001145645 |
NM_033622 |
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| RefSeq (protein) |
NP_001139117 |
NP_296371 |
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| Location (UCSC) |
Chr 13:
108.9 – 108.96 Mb |
Chr 8:
10.01 – 10.04 Mb |
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| PubMed search |
[1] |
[2] |
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B-cell activating factor (BAFF) also known as tumor necrosis factor ligand superfamily member 13C is a protein that in humans is encoded by the TNFSF13C gene.[1][2] BAFF is also known as B Lymphocyte Stimulator (BLyS) and TNF- and APOL-related leukocyte expressed ligand (TALL-1) and the Dendritic cell-derived TNF-like molecule (CD257 antigen; cluster of differentiation 257).
Contents
- 1 Structure and function
- 2 Interactions
- 3 Clinical significance
- 4 References
- 5 Further reading
- 6 External links
Structure and function[edit]
BAFF is a cytokine that belongs to the tumor necrosis factor (TNF) ligand family. This cytokine is a ligand for receptors TNFRSF13B/TACI, TNFRSF17/BCMA, and TNFRSF13C/BAFFR. This cytokine is expressed in B cell lineage cells, and acts as a potent B cell activator. It has been also shown to play an important role in the proliferation and differentiation of B cells.[3]
BAFF is a 285-amino acid long peptide glycoprotein which undergoes glycosylation at residue 124. It is expressed as transmembrane protein on various cell types including monocytes, dendritic cells and bone marrow stromal cells. The transmembrane form can be cleaved from the membrane, generating a soluble protein fragment. BAFF is the natural ligand of three unusual tumor necrosis factor receptors named BAFF-R, TACI, and BCMA, all of which have differing binding affinities for it. These receptors are expressed mainly on mature B lymphocytes (TACI is also found on a subset of T-cells and BCMA on plasma cells). TACI binds worst since its affinity is higher for a protein similar to BAFF, called a proliferation-inducing ligand (APRIL). BCMA displays an intermediate binding phenotype and will work with either BAFF or APRIL to varying degrees. Signaling through BAFF-R and BCMA stimulates B lymphocytes to undergo proliferation and to counter apoptosis. All these ligands act as homotrimers (i.e. three of the same molecule) interacting with homotrimeric receptors,[4] although BAFF has been known to be active as either a hetero- or homotrimer.[5]
Interactions[edit]
B-cell activating factor has been shown to interact with TNFRSF13B,[6][7] TNFSF13[8] and TNFRSF17.[9][10]
Clinical significance[edit]
As an immunostimulant, BAFF (BLyS, TALL-1) is necessary for maintaining normal immunity. Inadequate level of BAFF will fail to activate B cells to produce enough immunoglobulin and will lead to immunodeficiency.
Human BLyS was expressed and purified in E. Coli. The BLyS protein in the engineered bacteria can be as rich as 50% to the bacteria’s total protein content and still retains activity after an easy purification procedure. Due to the ease of bacterial platform, the bacteria expressed BLyS will dramatically reduce the cost of BLyS as a potential pharmaceutical agent for immunodeficiency (http://www.ncbi.nlm.nih.gov/pubmed/14673506).
Excessive level of BAFF causes abnormally high antibody production, results in systemic lupus erythmatosis, rheumatoid arthritis, and many other autoimmune diseases.
Belimumab (Benlysta) is a monoclonal antibody developed by Human Genome Sciences and GlaxoSmithKline, with significant discovery input by Cambridge Antibody Technology, which specifically recognizes and inhibits the biological activity of B-Lymphocyte stimulator (BLyS) and is in clinical trials for treatment of Systemic lupus erythematosus and other auto-immune diseases.[11]
Blisibimod, a fusion protein inhibitor of BAFF, is in development by Anthera Pharmaceuticals, also primarily for the treatment of systemic lupus erythematosus.[12]
References[edit]
- ^ Shu HB, Hu WH, Johnson H (May 1999). "TALL-1 is a novel member of the TNF family that is down-regulated by mitogens". J. Leukoc. Biol. 65 (5): 680–3. PMID 10331498.
- ^ Schneider P, MacKay F, Steiner V, Hofmann K, Bodmer JL, Holler N, Ambrose C, Lawton P, Bixler S, Acha-Orbea H, Valmori D, Romero P, Werner-Favre C, Zubler RH, Browning JL, Tschopp J (June 1999). "BAFF, a novel ligand of the tumor necrosis factor family, stimulates B cell growth". J. Exp. Med. 189 (11): 1747–56. doi:10.1084/jem.189.11.1747. PMC 2193079. PMID 10359578.
- ^ "Entrez Gene: tumor necrosis factor (ligand) superfamily".
- ^ Oren DA, Li Y, Volovik Y, Morris TS, Dharia C, Das K, Galperina O, Gentz R, Arnold E (April 2002). "Structural basis of BLyS receptor recognition". Nat. Struct. Biol. 9 (4): 288–92. doi:10.1038/nsb769. PMID 11862220.
- ^ Daridon C, Youinou P, Pers JO (February 2008). "BAFF, APRIL, TWE-PRIL: who's who?". Autoimmun Rev 7 (4): 267–71. doi:10.1016/j.autrev.2007.05.002. PMID 18295728.
- ^ Wu Y, Bressette D, Carrell JA, Kaufman T, Feng P, Taylor K, Gan Y, Cho YH, Garcia AD, Gollatz E, Dimke D, LaFleur D, Migone TS, Nardelli B, Wei P, Ruben SM, Ullrich SJ, Olsen HS, Kanakaraj P, Moore PA, Baker KP (November 2000). "Tumor necrosis factor (TNF) receptor superfamily member TACI is a high affinity receptor for TNF family members APRIL and BLyS". J. Biol. Chem. 275 (45): 35478–85. doi:10.1074/jbc.M005224200. PMID 10956646.
- ^ Xia XZ, Treanor J, Senaldi G, Khare SD, Boone T, Kelley M, Theill LE, Colombero A, Solovyev I, Lee F, McCabe S, Elliott R, Miner K, Hawkins N, Guo J, Stolina M, Yu G, Wang J, Delaney J, Meng SY, Boyle WJ, Hsu H (July 2000). "TACI is a TRAF-interacting receptor for TALL-1, a tumor necrosis factor family member involved in B cell regulation". J. Exp. Med. 192 (1): 137–43. doi:10.1084/jem.192.1.137. PMC 1887716. PMID 10880535.
- ^ Roschke V, Sosnovtseva S, Ward CD, Hong JS, Smith R, Albert V, Stohl W, Baker KP, Ullrich S, Nardelli B, Hilbert DM, Migone TS (October 2002). "BLyS and APRIL form biologically active heterotrimers that are expressed in patients with systemic immune-based rheumatic diseases". J. Immunol. 169 (8): 4314–21. PMID 12370363.
- ^ Liu Y, Hong X, Kappler J, Jiang L, Zhang R, Xu L, Pan CH, Martin WE, Murphy RC, Shu HB, Dai S, Zhang G (May 2003). "Ligand-receptor binding revealed by the TNF family member TALL-1". Nature 423 (6935): 49–56. doi:10.1038/nature01543. PMID 12721620.
- ^ Shu HB, Johnson H (August 2000). "B cell maturation protein is a receptor for the tumor necrosis factor family member TALL-1". Proc. Natl. Acad. Sci. U.S.A. 97 (16): 9156–61. doi:10.1073/pnas.160213497. PMC 16838. PMID 10908663.
- ^ Navarra SV, Guzmán RM, Gallacher AE, Hall S, Levy RA, Jimenez RE, Li EK, Thomas M, Kim HY, León MG, Tanasescu C, Nasonov E, Lan JL, Pineda L, Zhong ZJ, Freimuth W, Petri MA; for the BLISS-52 Study Group. (February 2011). "Efficacy and safety of belimumab in patients with active systemic lupus erythematosus: a randomised, placebo-controlled, phase 3 trial.". Lancet. 377 (9767): 721–431. doi:10.1016/S0140-6736(10)61354-2. PMID 21296403.
- ^ ClinicalTrials.gov. "PEARL-SC Trial: A Study of the Efficacy, Safety, and Tolerability of A 623 Administration in Subjects With Systemic Lupus Erythematosus.". United States National Institute of Health. Retrieved 2011-07-15.
Further reading[edit]
- Nardelli B, Moore PA, Li Y, Hilbert DM (2003). "B lymphocyte stimulator (BLyS): a therapeutic trichotomy for the treatment of B lymphocyte diseases.". Leuk. Lymphoma 43 (7): 1367–73. doi:10.1080/10428190290033297. PMID 12389615.
- Zhou T, Zhang J, Carter R, Kimberly R (2003). "BLyS and B cell autoimmunity.". Curr. Dir. Autoimmun. 6: 21–37. doi:10.1159/000066854. PMID 12408045.
- Stohl W (2005). "A therapeutic role for BLyS antagonists.". Lupus 13 (5): 317–22. doi:10.1191/0961203304lu1019oa. PMID 15230285.
- Quartuccio L, Fabris M, Ferraccioli G (2004). "[B lymphocyte stimulator (BLyS) and monocytes: possible role in autoimmune diseases with a particular reference to rheumatoid arthritis]". Reumatismo 56 (3): 143–6. PMID 15470519.
- Sutherland AP, Mackay F, Mackay CR (2007). "Targeting BAFF: immunomodulation for autoimmune diseases and lymphomas.". Pharmacol. Ther. 112 (3): 774–86. doi:10.1016/j.pharmthera.2006.06.002. PMID 16863659.
- Bossen C, Schneider P (2007). "BAFF, APRIL and their receptors: structure, function and signaling.". Semin. Immunol. 18 (5): 263–75. doi:10.1016/j.smim.2006.04.006. PMID 16914324.
- Brink R (2007). "Regulation of B cell self-tolerance by BAFF.". Semin. Immunol. 18 (5): 276–83. doi:10.1016/j.smim.2006.04.003. PMID 16916609.
- Tangye SG, Bryant VL, Cuss AK, Good KL (2007). "BAFF, APRIL and human B cell disorders.". Semin. Immunol. 18 (5): 305–17. doi:10.1016/j.smim.2006.04.004. PMID 16916610.
- Treml LS, Crowley JE, Cancro MP (2007). "BLyS receptor signatures resolve homeostatically independent compartments among naïve and antigen-experienced B cells.". Semin. Immunol. 18 (5): 297–304. doi:10.1016/j.smim.2006.07.001. PMID 16919470.
- Woodland RT, Schmidt MR, Thompson CB (2007). "BLyS and B cell homeostasis.". Semin. Immunol. 18 (5): 318–26. doi:10.1016/j.smim.2006.06.001. PMID 16931037.
- Kalled SL (2007). "Impact of the BAFF/BR3 axis on B cell survival, germinal center maintenance and antibody production.". Semin. Immunol. 18 (5): 290–6. doi:10.1016/j.smim.2006.06.002. PMID 16931038.
- Mackay F, Leung H (2007). "The role of the BAFF/APRIL system on T cell function.". Semin. Immunol. 18 (5): 284–9. doi:10.1016/j.smim.2006.04.005. PMID 16931039.
- Bosello S, Pers JO, Rochas C, et al. (2007). "BAFF and rheumatic autoimmune disorders: implications for disease management and therapy.". International journal of immunopathology and pharmacology 20 (1): 1–8. PMID 17346422.
- Mukhopadhyay A, Ni J, Zhai Y, et al. (1999). "Identification and characterization of a novel cytokine, THANK, a TNF homologue that activates apoptosis, nuclear factor-kappaB, and c-Jun NH2-terminal kinase.". J. Biol. Chem. 274 (23): 15978–81. doi:10.1074/jbc.274.23.15978. PMID 10347144.
- Moore PA, Belvedere O, Orr A, et al. (1999). "BLyS: member of the tumor necrosis factor family and B lymphocyte stimulator.". Science 285 (5425): 260–3. doi:10.1126/science.285.5425.260. PMID 10398604.
- Tribouley C, Wallroth M, Chan V, et al. (2000). "Characterization of a new member of the TNF family expressed on antigen presenting cells.". Biol. Chem. 380 (12): 1443–7. doi:10.1515/BC.1999.186. PMID 10661873.
- Gross JA, Johnston J, Mudri S, et al. (2000). "TACI and BCMA are receptors for a TNF homologue implicated in B-cell autoimmune disease.". Nature 404 (6781): 995–9. doi:10.1038/35010115. PMID 10801128.
- Shu HB, Johnson H (2000). "B cell maturation protein is a receptor for the tumor necrosis factor family member TALL-1.". Proc. Natl. Acad. Sci. U.S.A. 97 (16): 9156–61. doi:10.1073/pnas.160213497. PMC 16838. PMID 10908663.
External links[edit]
- B-Cell Activating Factor at the US National Library of Medicine Medical Subject Headings (MeSH)
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PDB gallery
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1jh5: Crystal Structure of sTALL-1 of TNF family ligand
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1kd7: Crystal structure of an extracellular domain fragment of human BAFF
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1kxg: The 2.0 Ang Resolution Structure of BLyS, B Lymphocyte Stimulator.
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1oqd: Crystal structure of sTALL-1 and BCMA
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1oqe: Crystal structure of sTALL-1 with BAFF-R
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1osg: Complex between BAFF and a BR3 derived peptide presented in a beta-hairpin scaffold
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1otz: Crystal structure of the BAFF-BAFF-R complex (part I)
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Protein, glycoconjugate: glycoproteins and glycopeptides
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| Mucoproteins |
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Mucin
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- CD43
- CD164
- MUC1
- MUC2
- MUC3A
- MUC3B
- MUC4
- MUC5AC
- MUC5B
- MUC6
- MUC7
- MUC8
- MUC12
- MUC13
- MUC15
- MUC16
- MUC17
- MUC19
- MUC20
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Other
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- Haptoglobin
- Intrinsic factor
- Orosomucoid
- Peptidoglycan
- Phytohaemagglutinin
- Ovomucin
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| Proteoglycans |
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CS/DS
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- Decorin
- Biglycan
- Versican
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HS/CS
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CS
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- Chondroitin sulfate proteoglycans: Aggrecan
- Neurocan
- Brevican
- CD44
- CSPG4
- CSPG5
- Platelet factor 4
- Structural maintenance of chromosomes 3
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KS
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- Fibromodulin
- Lumican
- Keratocan
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HS
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| Other |
- Activin and inhibin
- ADAM
- Alpha 1-antichymotrypsin
- Apolipoprotein H
- CD70
- Asialoglycoprotein
- Avidin
- B-cell activating factor
- 4-1BB ligand
- Cholesterylester transfer protein
- Clusterin
- Colony-stimulating factor
- Hemopexin
- Lactoferrin
- Membrane glycoproteins
- Myelin protein zero
- Osteonectin
- Protein C
- Protein S
- Serum amyloid P component
- Sialoglycoprotein
- CD43
- Glycophorin
- Glycophorin C
- Thrombopoietin
- Thyroglobulin
- Thyroxine-binding proteins
- Transcortin
- Tumor necrosis factor alpha
- Uteroglobin
- Vitronectin
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mt, k, c/g/r/p/y/i, f/h/s/l/o/e, a/u, n, m
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k, cgrp/y/i, f/h/s/l/o/e, au, n, m, epon
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m (A16/C10), i (k, c/g/r/p/y/i, f/h/s/o/e, a/u, n, m)
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- biochemical families: carbohydrates
- alcohols
- glycoproteins
- glycosides
- lipids
- eicosanoids
- fatty acids / intermediates
- phospholipids
- sphingolipids
- steroids
- nucleic acids
- constituents / intermediates
- proteins
- amino acids / intermediates
- tetrapyrroles / intermediates
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Cell signaling: cytokines
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| By family |
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By function/
cell |
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B trdu: iter (nrpl/grfl/cytl/horl), csrc (lgic, enzr, gprc, igsr, intg, nrpr/grfr/cytr), itra (adap, gbpr, mapk), calc, lipd; path (hedp, wntp, tgfp+mapp, notp, jakp, fsap, hipp, tlrp)
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