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関: halobacteria

WordNet

halophiles in saline environments such as the Dead Sea or salt flats (同)halobacterium, halobacter

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出典(authority):フリー百科事典『ウィキペディア（Wikipedia）』「2013/06/24 07:53:58」(JST)

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In the taxonomy of microorganisms, the Euryarchaeota (Greek for "broad old quality") are a phylum of the Archaea.^[1]^[2]^[3]

The Euryarchaeota include the methanogens, which produce methane and are often found in intestines, the halobacteria, which survive extreme concentrations of salt, and some extremely thermophilic aerobes and anaerobes. They are separated from the other archaeans based mainly on rRNA sequences.

Phylogeny[edit]

The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN)^[4] and National Center for Biotechnology Information (NCBI)^[5] and the phylogeny is based on 16S rRNA-based LTP release 111 by 'The All-Species Living Tree' Project.^[6]

?Aciduliprofundum boonei ♠ Reysenbach et al. 2006

?'Candidatus Methanomethylophilus alvus' Borrel et al. 2012

?'Candidatus Micrarchaeum acidiphilum' Baker et al. 2010

?'Candidatus Parvarchaeum acidiphilum' Baker et al. 2010

?Nanohaloarchaea ♠

Methanopyrus kandleri

Methanococcales

Eurythermea

Thermococcaceae

	Methanomassiliicoccus luminyensis

	Thermoplasmatales

Neobacteria

Methanobacteriales

Archaeoglobaceae

Halomebacteria

	Methanomicrobia

	Halobacteriaceae

Notes:
♠ Strain found at the National Center for Biotechnology Information (NCBI) but not listed in the List of Prokaryotic names with Standing in Nomenclature (LPSN)

References[edit]

^ See the NCBI webpage on Euryarchaeota
^ C.Michael Hogan. 2010. Archaea. eds. E.Monosson & C.Cleveland, Encyclopedia of Earth. National Council for Science and the Environment, Washington DC.
^ Data extracted from the "NCBI taxonomy resources". National Center for Biotechnology Information. Retrieved 2007-03-19.
^ J.P. Euzéby. "Euryarchaeota". List of Prokaryotic names with Standing in Nomenclature (LPSN) [1]. Retrieved 2013-03-20.
^ Sayers et al. "Euryarchaeota". National Center for Biotechnology Information (NCBI) taxonomy database [2]. Retrieved 2013-03-20.
^ 'The All-Species Living Tree' Project."16S rRNA-based LTP release 111 (full tree)". Silva Comprehensive Ribosomal RNA Database [3]. Retrieved 2013-03-20.

External links[edit]

Comparative Analysis of Euryarchaeota Genomes (at DOE's IMG system)
J.P. Euzéby: List of Prokaryotic names with Standing in Nomenclature

NCBI taxonomy page for Euryarchaeota
Search Tree of Life taxonomy pages for Euryarchaeota
Search Species2000 page for Euryarchaeota
MicrobeWiki page for Euryarchaeota

English Journal

Prokaryote viruses studied by electron microscopy.

Ackermann HW, Prangishvili D.SourceDepartment of Microbiology, Immunology, and Infectiology, Faculty of Medicine, Félix d'Herelle Reference Center for Bacterial Viruses, Laval University, Quebec, Canada, ackermann@mcb.ulaval.ca.
Archives of virology.Arch Virol.2012 Oct;157(10):1843-9. Epub 2012 Jul 3.
This review summarizes the electron microscopical descriptions of prokaryote viruses. Since 1959, nearly 6300 prokaryote viruses have been described morphologically, including 6196 bacterial and 88 archaeal viruses. As in previous counts, the vast majority (96.3 %) are tailed, and only 230 (3.7 %)
PMID 22752841

Sulfur metabolism in archaea reveals novel processes.

Liu Y, Beer LL, Whitman WB.SourceDepartment of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT 06520, USA. Department of Microbiology, University of Georgia, Athens, GA 30602, USA.
Environmental microbiology.Environ Microbiol.2012 Oct;14(10):2632-44. doi: 10.1111/j.1462-2920.2012.02783.x. Epub 2012 May 25.
Studies on sulfur metabolism in archaea have revealed many novel enzymes and pathways and have advanced our understanding on metabolic processes, not only of the archaea, but of biology in general. A variety of dissimilatory sulfur metabolisms, i.e. reactions used for energy conservation, are found
PMID 22626264

Japanese Journal

Assessment of a biogas-generating microbial community in a pilot-scale anaerobic reactor(ENVIRONMENTAL BIOTECHNOLOGY)

Ziganshina Elvira E.,Bagmanova Alsu R.,Khilyas Irina V. [他],Ziganshin Ayrat M.
Journal of bioscience and bioengineering 117(6), 730-736, 2014-06
… Within the phylum Euryarchaeota, the members of the orders 1VIethanosarcinales and Methanomicrobiales were found at high levels. …
NAID 110009823159

Seasonal Transition of Active Bacterial and Archaeal Communities in Relation to Water Management in Paddy Soils

ITOH HIDEOMI,ISHII SATOSHI,SHIRATORI YUTAKA [他],Oshima Kenshiro,Otsuka Shigeto,Hattori Masahira,Senoo Keishi
Microbes and Environments 28(3), 370-380, 2013
… Clones related to the class Deltaproteobacteria and phylum Euryarchaeota were most frequently obtained from the samples collected under both waterlogged and drained conditions. …
NAID 130003361340

分子内同位体比で観る海底下のアーキアの生態 : エーテル脂質分子内のサルベージ経路と新生経路を例にして(企画総説「地球化学の最前線」)

高野淑識,力石嘉人,大河内直彦
地球化学 46(2), 113-128, 2012-07-16
… The planktonic and benthic archaeal assemblages include two major phyla Euryarchaeota and Crenarchaeota. …
NAID 110009489323

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リンク元	「halobacteria」「ユリ古細菌門」「ユリアーケオタ門」

「halobacteria」

Euryarchaeota
	Halobacterium sp. strain NRC-1, each cell about 5 µm in length.
Scientific classification
Domain:	Archaea
Kingdom:	Archaea
Phylum:	Euryarchaeota; Woese, Kandler & Wheelis, 1990
Classes
	Aciduliprofundum ♠ Reysenbach et al. 2006; 'Candidatus Methanomethylophilus' Borrel et al. 2012; 'Candidatus Micrarchaeum' Baker et al. 2010; 'Candidatus Parvarchaeum' Baker et al. 2010; Archaeoglobi; Halobacteria; Methanobacteria; Methanococci; Methanomicrobia; Methanopyri; Nanohaloarchaea; Thermococci; Thermoplasmata;
Synonyms
	Euryarchaeota Woese et al. 1990; Euryarchaeota Garrity and Holt 2002; not Euryarchaeota Cavalier-Smith 2002;

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[1] See the NCBI webpage on Euryarchaeota

[2] C.Michael Hogan. 2010. Archaea. eds. E.Monosson & C.Cleveland, Encyclopedia of Earth. National Council for Science and the Environment, Washington DC.

[3] Data extracted from the "NCBI taxonomy resources". National Center for Biotechnology Information. Retrieved 2007-03-19.

[4] J.P. Euzéby. "Euryarchaeota". List of Prokaryotic names with Standing in Nomenclature (LPSN) [1]. Retrieved 2013-03-20.

[5] Sayers et al. "Euryarchaeota". National Center for Biotechnology Information (NCBI) taxonomy database [2]. Retrieved 2013-03-20.

[6] 'The All-Species Living Tree' Project."16S rRNA-based LTP release 111 (full tree)". Silva Comprehensive Ribosomal RNA Database [3]. Retrieved 2013-03-20.

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Contents

Phylogeny[edit]

See also[edit]

References[edit]

Further reading[edit]

Scientific journals[edit]

Scientific books[edit]

Scientific databases[edit]