ヌクレオシダーゼ
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- N-glycosyl hydrolase
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出典(authority):フリー百科事典『ウィキペディア(Wikipedia)』「2016/03/04 16:31:34」(JST)
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Not to be confused with polynucleotide phosphorylase.
purine-nucleoside phosphorylase |
purine-nucleoside phosphorylase. PDB 1rct.[1]
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Identifiers |
EC number |
2.4.2.1 |
CAS number |
9030-21-1 |
Databases |
IntEnz |
IntEnz view |
BRENDA |
BRENDA entry |
ExPASy |
NiceZyme view |
KEGG |
KEGG entry |
MetaCyc |
metabolic pathway |
PRIAM |
profile |
PDB structures |
RCSB PDB PDBe PDBsum |
Gene Ontology |
AmiGO / EGO |
Search |
PMC |
articles |
PubMed |
articles |
NCBI |
proteins |
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Purine nucleoside phosphorylase |
PDB rendering based on 1m73.
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Available structures |
PDB |
Ortholog search: PDBe, RCSB |
List of PDB id codes |
1M73, 1PF7, 1PWY, 1RCT, 1RFG, 1RR6, 1RSZ, 1RT9, 1ULA, 1ULB, 1V2H, 1V3Q, 1V41, 1V45, 1YRY, 2A0W, 2A0X, 2A0Y, 2OC4, 2OC9, 2ON6, 2Q7O, 3BGS, 3D1V, 3GB9, 3GGS, 3INY, 3K8O, 3K8Q, 3PHB, 4EAR, 4EB8, 4ECE, 4GKA
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Identifiers |
Symbols |
PNP ; NP; PRO1837; PUNP |
External IDs |
OMIM: 164050 MGI: 97365 HomoloGene: 227 ChEMBL: 4338 GeneCards: PNP Gene |
EC number |
2.4.2.1 |
Gene ontology |
Molecular function |
• nucleoside binding
• purine nucleobase binding
• purine-nucleoside phosphorylase activity
• drug binding
• phosphate ion binding
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Cellular component |
• intracellular
• nucleus
• cytoplasm
• cytosol
• cytoskeleton
• extracellular exosome
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Biological process |
• nucleobase-containing compound metabolic process
• purine nucleobase metabolic process
• inosine catabolic process
• purine nucleotide catabolic process
• nicotinamide riboside catabolic process
• immune response
• NAD biosynthesis via nicotinamide riboside salvage pathway
• urate biosynthetic process
• positive regulation of T cell proliferation
• response to drug
• purine-containing compound salvage
• small molecule metabolic process
• positive regulation of alpha-beta T cell differentiation
• nucleobase-containing small molecule metabolic process
• interleukin-2 secretion
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Sources: Amigo / QuickGO |
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RNA expression pattern |
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More reference expression data |
Orthologs |
Species |
Human |
Mouse |
Entrez |
4860 |
18950 |
Ensembl |
ENSG00000198805 |
ENSMUSG00000021871 |
UniProt |
P00491 |
P23492 |
RefSeq (mRNA) |
NM_000270 |
NM_013632 |
RefSeq (protein) |
NP_000261 |
NP_038660 |
Location (UCSC) |
Chr 14:
20.47 – 20.48 Mb |
Chr 14:
50.94 – 50.97 Mb |
PubMed search |
[1] |
[2] |
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Purine nucleoside phosphorylase also known as PNPase and inosine phosphorylase is an enzyme that in humans is encoded by the NP gene.[2]
Contents
- 1 Function
- 2 Enzyme regulation
- 3 Clinical significance
- 4 See also
- 5 References
- 6 Further reading
- 7 External links
Function
Purine nucleoside phosphorylase is an enzyme involved in purine metabolism. PNP metabolizes inosine into hypoxanthine and guanosine into guanine, in each case creating ribose phosphate. Note: adenosine is first metabolized to inosine via the enzyme adenosine deaminase.[3]
Nucleoside phosphorylase is an enzyme which cleaves a nucleoside by phosphorylating the ribose to produce a nucleobase and ribose 1 phosphate. It is one enzyme of the nucleotide salvage pathways. These pathways allow the cell to produce nucleotide monophosphates when the de novo synthesis pathway has been interrupted or is non-existent (as is the case in the brain). Often the de novo pathway is interrupted as a result of chemotherapy drugs such as methotrexate or aminopterin.
All salvage pathway enzymes require a high energy phosphate donor such as ATP or PRPP.
- Thymidine can be phosphorylated by thymidine kinase (TK).
- Uridine can be phosphorylated by uridine kinase (UK).
- Cytidine can be phosphorylated by cytidine kinase (CK).
- Deoxycytidine can be phosphorylated by deoxycytidine kinase (DCK).
Adenosine uses the enzyme adenosine kinase, which is a very important enzyme in the cell. Attempts are being made to develop an inhibitor for the enzyme for use in cancer chemotherapy.
Enzyme regulation
This protein may use the morpheein model of allosteric regulation.[4]
Clinical significance
PNPase, together with adenosine deaminase (ADA), serves a key role in purine catabolism, referred to as the salvage pathway. Mutations in ADA lead to an accumulation of (d)ATP, which inhibits ribonucleotide reductase, leading to a deficiency in (d)CTPs and (d)TTPs, which, in turn, induces apoptosis in T-lymphocytes and B-lymphocytes, leading to severe combined immunodeficiency (SCID).[citation needed]
PNP-deficient patients will have an immunodeficiency problem. It affects only T-cells; B-cells are unaffected by the deficiency.
See also
- Purine nucleoside phosphorylase deficiency
References
- ^ Canduri, F.; Dos Santos, D. M.; Silva, R. G.; Mendes, M. A.; Basso, L. A.; Palma, M. S.; De Azevedo, W. F.; Santos, D. S. (2004). "Structures of human purine nucleoside phosphorylase complexed with inosine and ddI". Biochemical and Biophysical Research Communications 313 (4): 907–914. doi:10.1016/j.bbrc.2003.11.179. PMID 14706628.
- ^ "Entrez Gene: NP nucleoside phosphorylase".
- ^ Kaplan USMLE Biochemistry Review
- ^ Selwood T, Jaffe EK (Mar 2012). "Dynamic dissociating homo-oligomers and the control of protein function". Archives of Biochemistry and Biophysics 519 (2): 131–43. doi:10.1016/j.abb.2011.11.020. PMC 3298769. PMID 22182754.
Further reading
- Markert ML (1991). "Purine nucleoside phosphorylase deficiency". Immunodeficiency Reviews 3 (1): 45–81. PMID 1931007.
- Borgers M, Verhaegen H, De Brabander M, De Cree J, De Cock W, Thoné F, Geuens G (Nov 1978). "Purine nucleoside phosphorylase in chronic lymphocytic leukemia (CLL)". Blood 52 (5): 886–95. PMID 100152.
- Aust MR, Andrews LG, Barrett MJ, Norby-Slycord CJ, Markert ML (Oct 1992). "Molecular analysis of mutations in a patient with purine nucleoside phosphorylase deficiency". American Journal of Human Genetics 51 (4): 763–72. PMC 1682776. PMID 1384322.
- Andrews LG, Markert ML (Apr 1992). "Exon skipping in purine nucleoside phosphorylase mRNA processing leading to severe immunodeficiency". The Journal of Biological Chemistry 267 (11): 7834–8. PMID 1560016.
- Jonsson JJ, Williams SR, McIvor RS (Sep 1991). "Sequence and functional characterization of the human purine nucleoside phosphorylase promoter". Nucleic Acids Research 19 (18): 5015–20. doi:10.1093/nar/19.18.5015. PMC 328804. PMID 1923769.
- Ealick SE, Rule SA, Carter DC, Greenhough TJ, Babu YS, Cook WJ, Habash J, Helliwell JR, Stoeckler JD, Parks RE (Jan 1990). "Three-dimensional structure of human erythrocytic purine nucleoside phosphorylase at 3.2 A resolution". The Journal of Biological Chemistry 265 (3): 1812–20. PMID 2104852.
- Williams SR, Gekeler V, McIvor RS, Martin DW (Feb 1987). "A human purine nucleoside phosphorylase deficiency caused by a single base change". The Journal of Biological Chemistry 262 (5): 2332–8. PMID 3029074.
- Williams SR, Goddard JM, Martin DW (Jul 1984). "Human purine nucleoside phosphorylase cDNA sequence and genomic clone characterization". Nucleic Acids Research 12 (14): 5779–87. doi:10.1093/nar/12.14.5779. PMC 320030. PMID 6087295.
- Pannicke U, Tuchschmid P, Friedrich W, Bartram CR, Schwarz K (Dec 1996). "Two novel missense and frameshift mutations in exons 5 and 6 of the purine nucleoside phosphorylase (PNP) gene in a severe combined immunodeficiency (SCID) patient". Human Genetics 98 (6): 706–9. doi:10.1007/s004390050290. PMID 8931706.
- Markert ML, Finkel BD, McLaughlin TM, Watson TJ, Collard HR, McMahon CP, Andrews LG, Barrett MJ, Ward FE (1997). "Mutations in purine nucleoside phosphorylase deficiency". Human Mutation 9 (2): 118–21. doi:10.1002/(SICI)1098-1004(1997)9:2<118::AID-HUMU3>3.0.CO;2-5. PMID 9067751.
- Erion MD, Takabayashi K, Smith HB, Kessi J, Wagner S, Hönger S, Shames SL, Ealick SE (Sep 1997). "Purine nucleoside phosphorylase. 1. Structure-function studies". Biochemistry 36 (39): 11725–34. doi:10.1021/bi961969w. PMID 9305962.
- Erion MD, Stoeckler JD, Guida WC, Walter RL, Ealick SE (Sep 1997). "Purine nucleoside phosphorylase. 2. Catalytic mechanism". Biochemistry 36 (39): 11735–48. doi:10.1021/bi961970v. PMID 9305963.
- Stoeckler JD, Poirot AF, Smith RM, Parks RE, Ealick SE, Takabayashi K, Erion MD (Sep 1997). "Purine nucleoside phosphorylase. 3. Reversal of purine base specificity by site-directed mutagenesis". Biochemistry 36 (39): 11749–56. doi:10.1021/bi961971n. PMID 9305964.
- Sasaki Y, Iseki M, Yamaguchi S, Kurosawa Y, Yamamoto T, Moriwaki Y, Kenri T, Sasaki T, Yamashita R (Jul 1998). "Direct evidence of autosomal recessive inheritance of Arg24 to termination codon in purine nucleoside phosphorylase gene in a family with a severe combined immunodeficiency patient". Human Genetics 103 (1): 81–5. doi:10.1007/s004390050787. PMID 9737781.
- Sheppard TL, Ordoukhanian P, Joyce GF (Jul 2000). "A DNA enzyme with N-glycosylase activity". Proceedings of the National Academy of Sciences of the United States of America 97 (14): 7802–7. doi:10.1073/pnas.97.14.7802. PMC 16625. PMID 10884411.
- Dalal I, Grunebaum E, Cohen A, Roifman CM (Jun 2001). "Two novel mutations in a purine nucleoside phosphorylase (PNP)-deficient patient". Clinical Genetics 59 (6): 430–7. doi:10.1034/j.1399-0004.2001.590608.x. PMID 11453975.
- Ivings L, Pennington SR, Jenkins R, Weiss JL, Burgoyne RD (May 2002). "Identification of Ca2+-dependent binding partners for the neuronal calcium sensor protein neurocalcin delta: interaction with actin, clathrin and tubulin". The Biochemical Journal 363 (Pt 3): 599–608. doi:10.1042/0264-6021:3630599. PMC 1222513. PMID 11964161.
- Falkenberg M, Gaspari M, Rantanen A, Trifunovic A, Larsson NG, Gustafsson CM (Jul 2002). "Mitochondrial transcription factors B1 and B2 activate transcription of human mtDNA". Nature Genetics 31 (3): 289–94. doi:10.1038/ng909. PMID 12068295.
- Stoychev G, Kierdaszuk B, Shugar D (Aug 2002). "Xanthosine and xanthine. Substrate properties with purine nucleoside phosphorylases, and relevance to other enzyme systems". European Journal of Biochemistry / FEBS 269 (16): 4048–57. doi:10.1046/j.1432-1033.2002.03097.x. PMID 12180982.
External links
- Human PNP at Cornell University
- E. Coli PNP at Cornell University
- Purine-Nucleoside Phosphorylase at the US National Library of Medicine Medical Subject Headings (MeSH)
PDB gallery
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1m73: Crystal structure of human PNP at 2.3A resolution
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1pf7: Crystal structure of human PNP complexed with Immucillin H
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1pwy: Crystal structure of human PNP complexed with acyclovir
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1rct: Crystal structure of human purine nucleoside phosphorylase complexed with inosine
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1rfg: Crystal structure of human purine nucleoside phosphorylase complexed with guanosine
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1rr6: Structure of human purine nucleoside phosphorylase in complex with Immucillin-H and phosphate
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1rsz: Structure of human purine nucleoside phosphorylase in complex with DADMe-Immucillin-H and sulfate
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1rt9: Structure of human purine nucleoside phosphorylase in complex with Immucillin-H and sulfate
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1ula: Application of crystallographic and modeling methods in the design of purine nucleoside phosphorylase inhibitors
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1ulb: Application of crystallographic and modeling methods in the design of purine nucleoside phosphorylase inhibitors
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1v2h: Crystal structure of human PNP complexed with guanine
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1v3q: Structure of human PNP complexed with DDI
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1v41: Crystal structure of human PNP complexed with 8-Azaguanine
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1v45: Crystal structure of human PNP complexed with 3-deoxyguanosine
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1yry: Crystal structure of human PNP complexed with MESG
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2a0w: Structure of human purine nucleoside phosphorylase H257G mutant
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2a0x: Structure of human purine nucleoside phosphorylase H257F mutant
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2a0y: Structure of human purine nucleoside phosphorylase H257D mutant
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2oc4: Crystal structure of human purine nucleoside phosphorylase mutant H257D with Imm-H
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2oc9: Crystal structure of human purine nucleoside phosphorylase mutant H257G with Imm-H
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2on6: Crystal structure of human purine nucleoside phosphorylase mutant H257F with Imm-H
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Transferases: glycosyltransferases (EC 2.4)
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2.4.1: Hexosyl-
transferases |
Glucosyl- |
- Phosphorylase
- Glycogen synthase
- Debranching enzyme
- Branching enzyme
- 1,3-Beta-glucan synthase
- Ceramide glucosyltransferase
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Galactosyl- |
- Lactose synthase
- B-N-acetylglucosaminyl-glycopeptide b-1,4-galactosyltransferase
- Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase (C1GALT1)
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Glucuronosyl- |
- UGT1A1
- UGT1A3
- UGT1A4
- UGT1A5
- UGT1A6
- UGT1A7
- UGT1A8
- UGT1A9
- UGT1A10
- UGT2A1
- UGT2A2
- UGT2A3
- UGT2B4
- UGT2B7
- UGT2B10
- UGT2B11
- UGT2B15
- UGT2B17
- UGT2B28
- Hyaluronan synthase: HAS1
- HAS2
- HAS3
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Fucosyl- |
- POFUT1
- POFUT2
- FUT1
- FUT2
- FUT3
- FUT4
- FUT5
- FUT6
- FUT7
- FUT8
- FUT9
- FUT10
- FUT11
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Mannosyl- |
- Dolichyl-phosphate-mannose-protein mannosyltransferase
- DPM1
- DPM3
- ALG1
- ALG2
- ALG3
- ALG6
- ALG8
- ALG9
- ALG12
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2.4.2: Pentosyl-
transferases |
Ribose |
ADP-ribosyltransferase |
- NAD+:diphthamide ADP-ribosyltransferase
- NAD(P)+:arginine ADP-ribosyltransferase
- Pertussis toxin
- Cholera toxin
- Poly ADP ribose polymerase
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Phosphoribosyltransferase |
- Adenine phosphoribosyltransferase
- Hypoxanthine-guanine phosphoribosyltransferase
- Uracil phosphoribosyltransferase
- Amidophosphoribosyltransferase
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Other |
- Purine nucleoside phosphorylase: Thymidine phosphorylase
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Other |
- Xylosyltransferase
- Arabinosyltransferase
- Indolylacetylinositol arabinosyltransferase
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2.4.99: Sialyl
transferases |
- Beta-galactoside alpha-2,6-sialyltransferase
- Monosialoganglioside sialyltransferase
- ST8SIA4
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- Metabolism: amino acid metabolism
- nucleotide enzymes
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Purine metabolism |
Anabolism |
R5P→IMP: |
- Ribose-phosphate diphosphokinase
- Amidophosphoribosyltransferase
- Phosphoribosylglycinamide formyltransferase
- AIR synthetase (FGAM cyclase)
- Phosphoribosylaminoimidazole carboxylase
- Phosphoribosylaminoimidazolesuccinocarboxamide synthase
- IMP synthase
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IMP→AMP: |
- Adenylosuccinate synthase
- Adenylosuccinate lyase
- reverse
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IMP→GMP: |
- IMP dehydrogenase
- GMP synthase
- reverse
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Nucleotide salvage |
- Hypoxanthine-guanine phosphoribosyltransferase
- Adenine phosphoribosyltransferase
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Catabolism |
- Adenosine deaminase
- Purine nucleoside phosphorylase
- Guanine deaminase
- Xanthine oxidase
- Urate oxidase
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Pyrimidine metabolism |
Anabolism |
- CAD
- Carbamoyl phosphate synthase II
- Aspartate carbamoyltransferase
- Dihydroorotase
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- Dihydroorotate dehydrogenase
- Orotidine 5'-phosphate decarboxylase/Uridine monophosphate synthetase
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Catabolism |
- Dihydropyrimidine dehydrogenase
- Dihydropyrimidinase/DPYS
- Beta-ureidopropionase/UPB1
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Deoxyribonucleotides |
- Ribonucleotide reductase
- Nucleoside-diphosphate kinase
- DCMP deaminase
- Thymidylate synthase
- Dihydrofolate reductase
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UpToDate Contents
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English Journal
- Transition State Structure and Inhibition of Rv0091, a 5'-Deoxyadenosine/5'-methylthioadenosine Nucleosidase from Mycobacterium tuberculosis.
- Namanja-Magliano HA1, Stratton CF1, Schramm VL1.
- ACS chemical biology.ACS Chem Biol.2016 Apr 8. [Epub ahead of print]
- 5'-Methylthioadenosine/S-adenosylhomocysteine nucleosidase (MTAN) is a bacterial enzyme that catalyzes the hydrolysis of the N-ribosidic bond in 5'-methylthioadenosine (MTA) and S-adenosylhomocysteine (SAH). MTAN activity has been linked to quorum sensing pathways, polyamine biosynthesis, and adenin
- PMID 27019223
- The peptidergic control circuit for sighing.
- Li P1, Janczewski WA2, Yackle K1, Kam K2, Pagliardini S2, Krasnow MA1, Feldman JL2.
- Nature.Nature.2016 Feb 18;530(7590):293-7. doi: 10.1038/nature16964. Epub 2016 Feb 8.
- Sighs are long, deep breaths expressing sadness, relief or exhaustion. Sighs also occur spontaneously every few minutes to reinflate alveoli, and sighing increases under hypoxia, stress, and certain psychiatric conditions. Here we use molecular, genetic, and pharmacologic approaches to identify a pe
- PMID 26855425
- The Corynebacterium pseudotuberculosis genome contains two formamidopyrimidine-DNA glycosylase enzymes, only one of which recognizes and excises 8-oxoguanine lesion.
- Arantes LS1, Nova LG2, Resende BC3, Bitar M4, Coelho IE5, Miyoshi A6, Azevedo VA7, Lara Dos Santos L8, Machado CR9, de Oliveira Lopes D10.
- Gene.Gene.2016 Jan 10;575(2 Pt 1):233-43. doi: 10.1016/j.gene.2015.08.065. Epub 2015 Sep 2.
- The GO-system is a DNA repair mechanism that prevents and corrects oxidative DNA damage. Formamidopyrimidine-DNA glycosylase (FPG/MutM) participates in this system, avoiding the mutagenic effects of 8-oxoguanine lesion into DNA. Corynebacterium pseudotuberculosis, the etiological agent of caseous ly
- PMID 26341054
Japanese Journal
- 1P-098 新規なヌクレオシダーゼに見出したリボシル基転移活性による2'-O-メチルリボヌクレオシド合成(発酵生理学,発酵工学,一般講演)
- Pentose Oxidation by Acetic Acid Bacteria Led to a Finding of Membrane-Bound Purine Nucleosidase
- Bioscience, biotechnology, and biochemistry 77(5), 1131-1133, 2013-05-23
- NAID 10031177613
- A Cell Wall-Bound Adenosine Nucleosidase is Involved in the Salvage of Extracellular ATP in Solanum tuberosum
Related Links
- nucleosidase [noo″kle-o-si´dās] an intracellular enzyme that is capable of causing the decomposition of nucleosides. nucleosidase /nu·cleo·si·dase/ (-si´dās) an enzyme that catalyzes the splitting of a nucleoside to form a purine or ...
- Nucleosidase definition, any of the class of enzymes that catalyze the hydrolysis of nucleosides. See more. ... nucleosidase nu·cle·o·si·dase (nōō'klē-ə-sī'dās', -dāz', -klē-ō'sĭ-, nyōō'-) n. Any of various enzymes that catalyze the ...
Related Pictures
★リンクテーブル★
[★]
N-グリコシル加水分解酵素、N-グリコシルヒドロラーゼ
- 関
- nucleosidase
[★]
- 英
- [[]]
- 同
- nucleosidase
- 関
- [[]]
- 同
- nucleosidase
[★]
NADヌクレオシダーゼ
- 関
- NAD glycohydrolase、NAD+ nucleosidase、NADase
[★]
NADヌクレオシダーゼ
- 関
- NAD glycohydrolase、NAD nucleosidase、NADase