Pseudomonas putida

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WordNet

1. type genus of the family Pseudomonodaceae (同)genus Pseudomonas

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出典(authority):フリー百科事典『ウィキペディア（Wikipedia）』「2013/12/24 13:27:58」(JST)

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Pseudomonas putida
Scientific classification
Kingdom:	Bacteria
Phylum:	Proteobacteria
Class:	Gamma Proteobacteria
Order:	Pseudomonadales
Family:	Pseudomonadaceae
Genus:	Pseudomonas
Species:	P. putida
Binomial name
Pseudomonas putida Trevisan, 1889
Type strain
ATCC 12633 CCUG 12690 CFBP 2066 DSM 291 HAMBI 7 JCM 13063 and 20120 LMG 2257 NBRC 14164 NCAIM B.01634 NCCB 72006 and 68020 NCTC 10936
Synonyms
Bacillus fluorescens putidus" Flügge 1886 Bacillus putidus Trevisan 1889 Pseudomonas eisenbergii Migula 1900 Pseudomonas convexa Chester 1901 Pseudomonas incognita Chester 1901 Pseudomonas ovalis Chester 1901 Pseudomonas rugosa (Wright 1895) Chester 1901 Pseudomonas striata Chester 1901 Pseudomonas mildenbergii Bergey, et al. Arthrobacter siderocapsulatus Dubinina and Zhdanov 1975 Pseudomonas arvilla O. Hayaishi Pseudomonas barkeri Rhodes Pseudomonas cyanogena Hammer

Pseudomonas putida is a gram-negative rod-shaped saprotrophic soil bacterium. Based on 16S rRNA analysis, P. putida has been placed in the P. putida group, to which it lends its name.

It is the first patented organism in the world. Because it is a living organism the patent was disputed and brought before the United States Supreme Court in the historic court case Diamond v. Chakrabarty which the inventor, Ananda Mohan Chakrabarty, won. It demonstrates a very diverse metabolism, including the ability to degrade organic solvents such as toluene. This ability has been put to use in bioremediation, or the use of microorganisms to biodegrade oil. Use of P. putida is preferable to some other Pseudomonas species capable of such degradation as it is a safe species of bacteria, unlike P. aeruginosa for example, which is an opportunistic human pathogen.

Uses

Bioremediation

The diverse metabolism of P. putida may be exploited for bioremediation; for example, it is used as a soil inoculant to remedy naphthalene contaminated soils.

P. putida is capable of converting styrene oil into the biodegradable plastic PHA. This may be of use in the effective recycling of Polystyrene foam, otherwise thought to be non-biodegradable.

Biocontrol

P. putida has demonstrated potential biocontrol properties, as an effective antagonist of damping off diseases such as Pythium and Fusarium.

Oligonucleotide Usage Signatures of the Pseudomonas putida KT2440 Genome

Di- to pentanucleotide usage and the list of the most abundant octa- to tetradecanucleotides are useful measures of the bacterial genomic signature. The Pseudomonas putida KT2440 chromosome is characterized by strand symmetry and intra-strand parity of complementary oligonucleotides. Each tetranucleotide occurs with similar frequency on the two strands. Tetranucleotide usage is biased by G+C content and physicochemical constraints such as base stacking energy, dinucleotide propeller twist angle or trinucleotide bendability. The 105 regions with atypical oligonucleotide composition can be differentiated by their patterns of oligonucleotide usage into categories of horizontally acquired gene islands, multidomain genes or ancient regions such as genes for ribosomal proteins and RNAs. A species-specific extragenic palindromic sequence is the most common repeat in the genome that can be exploited for the typing of P. putida strains. In the coding sequence of P. putida LLL is the most abundant tripeptide.

Organic Synthesis

Certain variants of P. putida have been used in organic synthesis, the first example being the oxidation of benzene, employed by Prof. S. V. Ley in the synthesis of the cyclitol (+/-)pinitol.

CBB5 and caffeine consumption

Pseudomonas putida CBB5 can live on pure caffeine and has been observed to break caffeine down into carbon dioxide and ammonia.

References

External links

• Risk Assessment Summary, CEPA 1999. Pseudomonas putida CR30RNSLL(pADPTel).

• Pseudomonas putida is an example for plant growth promoting Rhizobacterium,which produces iron chelating substances.

UpToDate Contents

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• 1. 緑膿菌感染症に対する抗菌薬治療の原則 principles of antimicrobial therapy of pseudomonas aeruginosa infections
• 2. 緑膿菌菌血症と心内膜炎 pseudomonas aeruginosa bacteremia and endocarditis
• 3. 眼、耳、尿路、胃腸管、および中枢神経系における緑膿菌感染症 pseudomonas aeruginosa infections of the eye ear urinary tract gastrointestinal tract and central nervous system
• 4. 嚢胞性線維症：肺疾患に対する抗菌薬療法 cystic fibrosis antibiotic therapy for lung disease
• 5. 成人における確定診断を得られていない低血圧やショックの評価および初期アプローチ evaluation of and initial approach to the adult patient with undifferentiated hypotension and shock

English Journal

• Binary combination of epsilon-poly-l-lysine and isoeugenol affect progression of spoilage microbiota in fresh turkey meat, and delay onset of spoilage in Pseudomonas putida challenged meat.

• Hyldgaard M1, Meyer RL2, Peng M3, Hibberd AA3, Fischer J4, Sigmundsson A4, Mygind T4.
• International journal of food microbiology.Int J Food Microbiol.2015 Dec 23;215:131-42. doi: 10.1016/j.ijfoodmicro.2015.09.014. Epub 2015 Sep 25.
• Proliferation of microbial population on fresh poultry meat over time elicits spoilage when reaching unacceptable levels, during which process slime production, microorganism colony formation, negative organoleptic impact and meat structure change are observed. Spoilage organisms in raw meat, especi
• PMID 26433458

• Phenolic wastewater treatment through extractive recovery coupled with biodegradation in a two-phase partitioning membrane bioreactor.

• Praveen P1, Loh KC2.
• Chemosphere.Chemosphere.2015 Dec;141:176-82. doi: 10.1016/j.chemosphere.2015.07.022. Epub 2015 Jul 24.
• A two-phase partitioning membrane bioreactor (TPPMB) was designed and operated for treatment of high strength phenolic wastewater through extraction/stripping and concomitant biodegradation. Tributyl phosphate dissolved in kerosene was used as the organic phase, sodium hydroxide as the stripping pha
• PMID 26210322

• Understanding of real alternative redox partner of Streptomyces peucetius DoxA: Prediction and validation using in silico and in vitro analyses.

• Rimal H1, Lee SW1, Lee JH1, Oh TJ2.
• Archives of biochemistry and biophysics.Arch Biochem Biophys.2015 Nov 1;585:64-74. doi: 10.1016/j.abb.2015.08.019. Epub 2015 Sep 1.
• Streptomyces peucetius ATCC27952 contains the cytochrome P450 monoxygenase DoxA that is responsible for the hydroxylation of daunorubicin into doxorubicin. Although S. peucetius ATCC27952 contains several potential redox partners, the most suitable endogenous electron-transport system is still uncl
• PMID 26334717

Japanese Journal

• 3P-281 ポリヒドロキシアルカン酸における不飽和結合位置の解析(生合成,天然物化学,一般講演)

• 日本生物工学会大会講演要旨集 67, 341, 2015-09-25
• NAID 110010009696

• 3P-279 中鎖ホモPHA合成に適した重合酵素改変体のスクリーニング(生合成,天然物化学,一般講演)

• 日本生物工学会大会講演要旨集 67, 340, 2015-09-25
• NAID 110010009694

• 3P-197 固定化菌体二相培養系によるハロカテコール生産に対するpHの影響評価(バイオプロセス,一般講演)

• 日本生物工学会大会講演要旨集 67, 320, 2015-09-25
• NAID 110010009612

Related Links

• シュードモナス属 (Pseudomonas)：抗菌薬インターネットブック

Pseudomonas putida シュードモナス・プチダ 系統 抗菌薬 感受性 標準菌株 標準菌のMIC 臨床分離菌のMIC80 臨床分離菌のMIC60 備考 ニューキノロン系 Ciprofloxacin * 8 ** 0.5 ニューキノロン系 Sparfloxacin 50 ニューキノロン系 ...

• Pseudomonas putida KT2440 Summary - Pseudomonas ...

Pseudomonas putida KT2440 Link Database Experiment Title Analysis Type Samples References GSE23632 NCBI GEO Heterologous acyl-homoserine ...

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リンク元	「ブドウ糖非発酵グラム陰性桿菌」「プチダ菌」
関連記事	「Pseudomonas」

「ブドウ糖非発酵グラム陰性桿菌」

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英

glucose non-fermenting gram-negative rod, NF-GNR, glucose non-fermenting gram-negative bacillus

関

グラム陰性細菌

• Pseudomonas aeruginosa
• Pseudomonas cepacia
• Pseudomonas putida
• Xanthomonas maltophilia
• Acinetobacter calcoaceticus
• Flavobacterium memingosepticum

参考

http://www.yoshida-pharm.com/2004/letter29/

「プチダ菌」

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Pseudomonas putida

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シュードモナス・プチダ

「Pseudomonas」

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