ホスホグリセリン酸脱水素酵素、ホスホグリセリン酸デヒドロゲナーゼ
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出典(authority):フリー百科事典『ウィキペディア(Wikipedia)』「2012/04/08 20:21:45」(JST)
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Phosphoglycerate dehydrogenase |
PDB rendering based on 2g76. |
Available structures |
PDB |
Ortholog search: PDBe, RCSB |
List of PDB id codes |
2G76
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Identifiers |
Symbols |
PHGDH; 3-PGDH; 3PGDH; PDG; PGAD; PGD; PGDH; SERA |
External IDs |
OMIM: 606879 MGI: 1355330 HomoloGene: 39318 GeneCards: PHGDH Gene |
EC number |
1.1.1.95 |
Gene Ontology |
Molecular function |
• phosphoglycerate dehydrogenase activity
• phosphoglycerate dehydrogenase activity
• electron carrier activity
• oxidoreductase activity
• cofactor binding
• NAD binding
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Cellular component |
• cytosol
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Biological process |
• L-serine biosynthetic process
• L-serine biosynthetic process
• brain development
• cellular amino acid biosynthetic process
• cellular nitrogen compound metabolic process
• small molecule metabolic process
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Sources: Amigo / QuickGO |
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RNA expression pattern |
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More reference expression data |
Orthologs |
Species |
Human |
Mouse |
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Entrez |
26227 |
236539 |
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Ensembl |
ENSG00000092621 |
ENSMUSG00000053398 |
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UniProt |
O43175 |
Q61753 |
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RefSeq (mRNA) |
NM_006623.3 |
NM_016966.3 |
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RefSeq (protein) |
NP_006614.2 |
NP_058662.2 |
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Location (UCSC) |
Chr 1:
120.2 – 120.29 Mb |
Chr 3:
98.12 – 98.14 Mb |
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PubMed search |
[1] |
[2] |
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D-3-phosphoglycerate dehydrogenase is an enzyme that in humans is encoded by the PHGDH gene.[1]
3-Phosphoglycerate dehydrogenase (PHGDH; EC 1.1.1.95) catalyzes the transition of 3-phosphoglycerate into 3-phosphohydroxypyruvate, which is the first and rate-limiting step in the phosphorylated pathway of serine biosynthesis, using NAD+/NADH as a cofactor.[1] Certain breast cancers are dependent on the overexpression of PHGDH.[2]
References
- ^ a b "Entrez Gene: PHGDH phosphoglycerate dehydrogenase". http://www.ncbi.nlm.nih.gov/sites/entrez?Db=gene&Cmd=ShowDetailView&TermToSearch=26227.
- ^ Possemato, Richard; Marks, Kevin M., Shaul, Yoav D., Pacold, Michael E., Kim, Dohoon, Birsoy, Kıvanç, Sethumadhavan, Shalini, Woo, Hin-Koon, Jang, Hyun G., Jha, Abhishek K., Chen, Walter W., Barrett, Francesca G., Stransky, Nicolas, Tsun, Zhi-Yang, Cowley, Glenn S., Barretina, Jordi, Kalaany, Nada Y., Hsu, Peggy P., Ottina, Kathleen, Chan, Albert M., Yuan, Bingbing, Garraway, Levi A., Root, David E., Mino-Kenudson, Mari, Brachtel, Elena F., Driggers, Edward M., Sabatini, David M. (17 August 2011). "Functional genomics reveal that the serine synthesis pathway is essential in breast cancer". Nature 476 (7360): 346–350. doi:10.1038/nature10350.
Further reading
- Tsang HT, Connell JW, Brown SE, et al. (2006). "A systematic analysis of human CHMP protein interactions: additional MIT domain-containing proteins bind to multiple components of the human ESCRT III complex.". Genomics 88 (3): 333–46. doi:10.1016/j.ygeno.2006.04.003. PMID 16730941.
- Gregory SG, Barlow KF, McLay KE, et al. (2006). "The DNA sequence and biological annotation of human chromosome 1.". Nature 441 (7091): 315–21. doi:10.1038/nature04727. PMID 16710414.
- Guo D, Han J, Adam BL, et al. (2005). "Proteomic analysis of SUMO4 substrates in HEK293 cells under serum starvation-induced stress.". Biochem. Biophys. Res. Commun. 337 (4): 1308–18. doi:10.1016/j.bbrc.2005.09.191. PMID 16236267.
- Gerhard DS, Wagner L, Feingold EA, et al. (2004). "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).". Genome Res. 14 (10B): 2121–7. doi:10.1101/gr.2596504. PMC 528928. PMID 15489334. http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=528928.
- Ota T, Suzuki Y, Nishikawa T, et al. (2004). "Complete sequencing and characterization of 21,243 full-length human cDNAs.". Nat. Genet. 36 (1): 40–5. doi:10.1038/ng1285. PMID 14702039.
- Strausberg RL, Feingold EA, Grouse LH, et al. (2003). "Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.". Proc. Natl. Acad. Sci. U.S.A. 99 (26): 16899–903. doi:10.1073/pnas.242603899. PMC 139241. PMID 12477932. http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=139241.
- Pind S, Slominski E, Mauthe J, et al. (2002). "V490M, a common mutation in 3-phosphoglycerate dehydrogenase deficiency, causes enzyme deficiency by decreasing the yield of mature enzyme.". J. Biol. Chem. 277 (9): 7136–43. doi:10.1074/jbc.M111419200. PMID 11751922.
- Klomp LW, de Koning TJ, Malingré HE, et al. (2001). "Molecular characterization of 3-phosphoglycerate dehydrogenase deficiency--a neurometabolic disorder associated with reduced L-serine biosynthesis.". Am. J. Hum. Genet. 67 (6): 1389–99. doi:10.1086/316886. PMC 1287916. PMID 11055895. http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=1287916.
- Pineda M, Vilaseca MA, Artuch R, et al. (2000). "3-phosphoglycerate dehydrogenase deficiency in a patient with West syndrome.". Developmental medicine and child neurology 42 (9): 629–33. doi:10.1017/S0012162200001171. PMID 11034457.
- Baek JY, Jun DY, Taub D, Kim YH (2000). "Assignment of human 3-phosphoglycerate dehydrogenase (PHGDH) to human chromosome band 1p12 by fluorescence in situ hybridization.". Cytogenet. Cell Genet. 89 (1-2): 6–7. doi:10.1159/000015577. PMID 10894924.
- Cho HM, Jun DY, Bae MA, et al. (2000). "Nucleotide sequence and differential expression of the human 3-phosphoglycerate dehydrogenase gene.". Gene 245 (1): 193–201. doi:10.1016/S0378-1119(00)00009-3. PMID 10713460.
- Jaeken J, Detheux M, Van Maldergem L, et al. (1996). "3-Phosphoglycerate dehydrogenase deficiency: an inborn error of serine biosynthesis.". Arch. Dis. Child. 74 (6): 542–5. doi:10.1136/adc.74.6.542. PMC 1511571. PMID 8758134. http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=1511571.
PDB gallery
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2g76: Crystal structure of human 3-phosphoglycerate dehydrogenase
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UpToDate Contents
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English Journal
- Comparative analysis of the hepatopancreas transcriptome of grass carp (Ctenopharyngodon idellus) fed with lard oil and fish oil diets.
- Tian JJ1, Lu RH2, Ji H3, Sun J1, Li C1, Liu P1, Lei CX1, Chen LQ4, Du ZY4.
- Gene.Gene.2015 Jul 10;565(2):192-200. doi: 10.1016/j.gene.2015.04.010. Epub 2015 Apr 10.
- n-3 highly unsaturated fatty acids (n-3 HUFAs) have been shown to suppress lipid accumulation and improve protein utilization in grass carp; however, little is known about the underlying molecular mechanism. Hence, we analyzed the hepatopancreas transcriptome of grass carp (Ctenopharyngodon idellus)
- PMID 25865300
- Quantitative expression proteomics and phosphoproteomics profile of brain from PINK1 knockout mice: insights into mechanisms of familial Parkinson's disease.
- Triplett JC1, Zhang Z, Sultana R, Cai J, Klein JB, Büeler H, Butterfield DA.
- Journal of neurochemistry.J Neurochem.2015 Jun;133(5):750-65. doi: 10.1111/jnc.13039. Epub 2015 Mar 1.
- Parkinson's disease (PD) is an age-related, neurodegenerative motor disorder characterized by progressive degeneration of dopaminergic neurons in the substantia nigra pars compacta and presence of α-synuclein-containing protein aggregates. Mutations in the mitochondrial Ser/Thr kinase PTEN-induced
- PMID 25626353
- Evaluation of a Hypoxia Regulated Gene Panel in Ovarian Cancer.
- Baker AF1, Malm SW, Pandey R, Laughren C, Cui H, Roe D, Chambers SK.
- Cancer microenvironment : official journal of the International Cancer Microenvironment Society.Cancer Microenviron.2015 May 22. [Epub ahead of print]
- A panel of nine hypoxia regulated genes, selected from a previously published fifty gene panel, was investigated for its ability to predict hypoxic ovarian cancer phenotypes. All nine genes including vascular endothelial growth factor A, glucose transporter 1, phosphoglycerate mutase 1, lactate dehy
- PMID 25998313
Japanese Journal
- 梁 簫,吉田 朝美,長富 潔 [他],原 研治
- 日本食品化学学会誌 19(1), 14-22, 2012-04-23
- SDS-PAGE法及び二次元電気泳動法を用いて、養殖ブリやけ肉発生に伴う筋形質タンパク質の変化を調べた。やけ肉発生時に減少した筋形質タンパク質を質量分析法(MALDI-QIT-TOFMS)法により分析したところ、グリコーゲンホスホリラーゼ(PYMG)、ホスホグリセリン酸キナーゼ(PGK)、クレアチンキナーゼ(CK)、グリセルアルデヒド三リン酸脱水素酵素(GAPDH)、乳酸脱水素酵素(LDH)及びア …
- NAID 110009436676
- Detection of D-3-phosphoglycerate dehydrogenase autoantibodies in patients with autoimmune hepatitis : Clinical significance evaluation
- XIANG Daijun,XIA Qing,CHEN Dexi,FENG Xia,ZHAO Yan,LIU Yan,LIAO Huiyu,LIU Yanmin,LI Ning,YAN Huiping
- Hepatology research : the official journal of the Japan Society of Hepatology 41(9), 867-876, 2011-09-01
- NAID 10031144159
- Role of satellite cell-derived l-serine in the dorsal root ganglion in paclitaxel-induced painful peripheral neuropathy
- Kiya T,Kawamata T,Namiki A,Yamakage M
- NEUROSCIENCE 174, 190-199, 2011-02-03
- … Response to von Frey filaments, SNCV, 3-phosphoglycerate dehydrogenase (3PGDH) expression, and L-serine concentration were examined. …
- NAID 120005248088
Related Links
- Phosphoglycerate dehydrogenase deficiency is a condition characterized by an unusually small head size (microcephaly); impaired development of physical reactions, movements, and speech (psychomotor retardation ...
- The official name of this gene is “phosphoglycerate dehydrogenase.” PHGDH is the gene's official symbol. The PHGDH gene is also known by other names, listed below. Read more about gene names and symbols on ...
Related Pictures
★リンクテーブル★
[★]
- 英
- phosphoglycerate dehydrogenase
- 関
- ホスホグリセリン酸デヒドロゲナーゼ
[★]
- 英
- phosphoglycerate dehydrogenase
- 関
- ホスホグリセリン酸脱水素酵素
[★]
脱水素酵素 デヒドロゲナーゼ
[★]
脱水素酵素 デヒドロゲナーゼ
[★]
ホスホグリセリン酸