WordNet
- crystalline oxidation product of the metabolism of nucleoproteins; precursor of uric acid; found in many organs and in urine
Wikipedia preview
出典(authority):フリー百科事典『ウィキペディア(Wikipedia)』「2014/07/18 21:26:24」(JST)
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Xanthine dehydrogenase |
PDB rendering based on 1fiq. |
Available structures |
PDB |
Ortholog search: PDBe, RCSB |
List of PDB id codes |
2CKJ, 2E1Q
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Identifiers |
Symbols |
XDH ; XO; XOR |
External IDs |
OMIM: 607633 MGI: 98973 HomoloGene: 324 ChEMBL: 1929 GeneCards: XDH Gene |
EC number |
1.17.1.4, 1.17.3.2 |
Gene ontology |
Molecular function |
• xanthine dehydrogenase activity
• xanthine oxidase activity
• iron ion binding
• UDP-N-acetylmuramate dehydrogenase activity
• electron carrier activity
• protein homodimerization activity
• molybdopterin cofactor binding
• flavin adenine dinucleotide binding
• 2 iron, 2 sulfur cluster binding
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Cellular component |
• extracellular region
• peroxisome
• cytosol
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Biological process |
• negative regulation of protein phosphorylation
• negative regulation of endothelial cell proliferation
• purine nucleobase metabolic process
• purine nucleotide catabolic process
• activation of cysteine-type endopeptidase activity involved in apoptotic process
• lactation
• xanthine catabolic process
• negative regulation of gene expression
• small molecule metabolic process
• negative regulation of endothelial cell differentiation
• negative regulation of protein kinase B signaling cascade
• nucleobase-containing small molecule metabolic process
• positive regulation of p38MAPK cascade
• negative regulation of vascular endothelial growth factor signaling pathway
• positive regulation of reactive oxygen species metabolic process
• negative regulation of vasculogenesis
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Sources: Amigo / QuickGO |
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RNA expression pattern |
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More reference expression data |
Orthologs |
Species |
Human |
Mouse |
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Entrez |
7498 |
22436 |
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Ensembl |
ENSG00000158125 |
ENSMUSG00000024066 |
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UniProt |
P47989 |
Q00519 |
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RefSeq (mRNA) |
NM_000379 |
NM_011723 |
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RefSeq (protein) |
NP_000370 |
NP_035853 |
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Location (UCSC) |
Chr 2:
31.56 – 31.64 Mb |
Chr 17:
73.88 – 73.95 Mb |
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PubMed search |
[1] |
[2] |
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xanthine dehydrogenase |
Identifiers |
EC number |
1.17.1.4 |
CAS number |
9054-84-6 |
Databases |
IntEnz |
IntEnz view |
BRENDA |
BRENDA entry |
ExPASy |
NiceZyme view |
KEGG |
KEGG entry |
MetaCyc |
metabolic pathway |
PRIAM |
profile |
PDB structures |
RCSB PDB PDBe PDBsum |
Gene Ontology |
AmiGO / EGO |
Search |
PMC |
articles |
PubMed |
articles |
NCBI |
proteins |
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Xanthine dehydrogenase, also known as XDH, is a protein that, in humans, is encoded by the XDH gene.[1][2]
Contents
- 1 Function
- 2 Nomenclature
- 3 Clinical significance
- 4 See also
- 5 References
- 6 Further reading
Function
Xanthine dehydrogenase belongs to the group of molybdenum-containing hydroxylases involved in the oxidative metabolism of purines. The enzyme is a homodimer. Xanthine dehydrogenase can be converted to xanthine oxidase by reversible sulfhydryl oxidation or by irreversible proteolytic modification.[1]
Xanthine dehydrogenase catalyzes the following chemical reaction:
- xanthine + NAD+ + H2O urate + NADH + H+
The three substrates of this enzyme are xanthine, NAD+, and H2O, whereas its three products are urate, NADH, and H+.
This enzyme participates in purine metabolism.
Nomenclature
This enzyme belongs to the family of oxidoreductases, to be specific, those acting on CH or CH2 groups with NAD+ or NADP+ as acceptor. The systematic name of this enzyme class is xanthine:NAD+ oxidoreductase. Other names in common use include NAD+-xanthine dehydrogenase, xanthine-NAD+ oxidoreductase, xanthine/NAD+ oxidoreductase, and xanthine oxidoreductase.
Clinical significance
Defects in xanthine dehydrogenase cause xanthinuria, may contribute to adult respiratory stress syndrome, and may potentiate influenza infection through an oxygen metabolite-dependent mechanism.[1]
See also
- aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
- MOCOS
- xanthine oxidase
References
- ^ a b c "Entrez Gene: XDH xanthine dehydrogenase". Retrieved October 25, 2012.
- ^ Ichida K, Amaya Y, Noda K, Minoshima S, Hosoya T, Sakai O, Shimizu N, Nishino T (November 1993). "Cloning of the cDNA encoding human xanthine dehydrogenase (oxidase): structural analysis of the protein and chromosomal location of the gene". Gene 133 (2): 279–84. doi:10.1016/0378-1119(93)90652-J. PMID 8224915.
Further reading
- Battelli MG, Lorenzoni E (1982). "Purification and properties of a new glutathione-dependent thiol:disulphide oxidoreductase from rat liver". Biochem. J. 207 (1): 133–8. PMC 1153833. PMID 6960894.
- Corte ED, Stirpe F (1972). "The regulation of rat liver xanthine oxidase. Involvement of thiol groups in the conversion of the enzyme activity from dehydrogenase (type D) into oxidase (type O) and purification of the enzyme". Biochem. J. 126 (3): 739–45. PMC 1178433. PMID 4342395.
- Parzen SD, Fox AS (1964). "Purification of Xanthine Dehydrogenase from Drosophila Melanogaster". Biochim. Biophys. Acta. 92: 465–71. doi:10.1016/0926-6569(64)90006-9. PMID 14264879.
- Rajagopalan KV, Handler P (1967). "Purification and properties of chicken liver xanthine dehydrogenase". J. Biol. Chem. 242 (18): 4097–107. PMID 4294045.
- Smith ST, Rajagopalan KV, Handler P (1967). "Purification and properties of xanthine dehydroganase from Micrococcus lactilyticus". J. Biol. Chem. 242 (18): 4108–17. PMID 6061702.
- Parschat K, Canne C, Huttermann J, Kappl R, Fetzner S (2001). "Xanthine dehydrogenase from Pseudomonas putida 86: specificity, oxidation-reduction potentials of its redox-active centers, and first EPR characterization". Biochim. Biophys. Acta. 1544 (1–2): 151–65. doi:10.1016/S0167-4838(00)00214-4. PMID 11341925.
- N, Nishino T; Amaya, Y; Noda, K; Minoshima, S; Hosoya, T; Sakai, O; Shimizu, N; Nishino, T (1993). "Cloning of the cDNA encoding human xanthine dehydrogenase (oxidase): structural analysis of the protein and chromosomal location of the gene". Gene. 133 (2): 279–84. doi:10.1016/0378-1119(93)90652-J. PMID 8224915.
- Enroth C, Eger BT, Okamoto K, Nishino T, Nishino T, Pai EF (2000). "Crystal structures of bovine milk xanthine dehydrogenase and xanthine oxidase: Structure-based mechanism of conversion". Proc. Natl. Acad. Sci. U.S.A. 97 (20): 10723–8. doi:10.1073/pnas.97.20.10723. PMC 27090. PMID 11005854.
- Truglio, J; Theis, K; Leimkühler, S; Rappa, R; Rajagopalan, KV; Kisker, C (1 January 2002). "Crystal structures of the active and alloxanthine-inhibited forms of xanthine dehydrogenase from Rhodobacter capsulatus". S. Structure. (1): 115–25. doi:10.1016/S0969-2126(01)00697-9. PMID 11796116.
- Hille R (1996). "The Mononuclear Molybdenum Enzymes". Chem. Rev. 96 (7): 2757–2816. doi:10.1021/cr950061t. PMID 11848841.
- Meneshian A, Bulkley GB (2002). "The physiology of endothelial xanthine oxidase: from urate catabolism to reperfusion injury to inflammatory signal transduction". Microcirculation (New York, N.Y. : 1994) 9 (3): 161–75. doi:10.1038/sj.mn.7800136. PMID 12080414.
- Xu P, Huecksteadt TP, Harrison R, Hoidal JR (1995). "Molecular cloning, tissue expression of human xanthine dehydrogenase". Biochem. Biophys. Res. Commun. 215 (1): 429. doi:10.1006/bbrc.1995.2482. PMID 7575623.
- Xu P, Zhu XL, Huecksteadt TP et al. (1995). "Assignment of human xanthine dehydrogenase gene to chromosome 2p22". Genomics 23 (1): 289–91. doi:10.1006/geno.1994.1498. PMID 7829092.
- Minoshima S, Wang Y, Ichida K et al. (1994). "Mapping of the gene for human xanthine dehydrogenase (oxidase) (XDH) to band p23 of chromosome 2". Cytogenet. Cell Genet. 68 (1–2): 52–3. doi:10.1159/000133887. PMID 7956358.
- Rytkönen EM, Halila R, Laan M et al. (1994). "The human gene for xanthine dehydrogenase (XDH) is localized on chromosome band 2q22". Cytogenet. Cell Genet. 68 (1–2): 61–3. doi:10.1159/000133890. PMID 7956361.
- Xu P, Huecksteadt TP, Harrison R, Hoidal JR (1994). "Molecular cloning, tissue expression of human xanthine dehydrogenase". Biochem. Biophys. Res. Commun. 199 (2): 998–1004. doi:10.1006/bbrc.1994.1328. PMID 8135849.
- Ichida K, Amaya Y, Noda K et al. (1993). "Cloning of the cDNA encoding human xanthine dehydrogenase (oxidase): structural analysis of the protein and chromosomal location of the gene". Gene 133 (2): 279–84. doi:10.1016/0378-1119(93)90652-J. PMID 8224915.
- Satoh A, Sasago S, Takahashi S, Kato N (1993). "Regulation of xanthine dehydrogenase in rat liver in response to peroxisome proliferators". Biochem. Biophys. Res. Commun. 195 (2): 751–7. doi:10.1006/bbrc.1993.2109. PMID 8373410.
- Xu P, Huecksteadt TP, Hoidal JR (1997). "Molecular cloning and characterization of the human xanthine dehydrogenase gene (XDH)". Genomics 34 (2): 173–80. doi:10.1006/geno.1996.0262. PMID 8661045.
- Saksela M, Raivio KO (1996). "Cloning and expression in vitro of human xanthine dehydrogenase/oxidase". Biochem. J. 315 (Pt 1): 235–9. PMC 1217176. PMID 8670112.
- Many A, Westerhausen-Larson A, Kanbour-Shakir A, Roberts JM (1996). "Xanthine oxidase/dehydrogenase is present in human placenta". Placenta 17 (5–6): 361–5. doi:10.1016/S0143-4004(96)90061-2. PMID 8829220.
- Hellsten Y, Frandsen U, Orthenblad N et al. (1997). "Xanthine oxidase in human skeletal muscle following eccentric exercise: a role in inflammation". J. Physiol. (Lond.) 498 (Pt 1): 239–48. PMC 1159248. PMID 9023782.
- Ichida K, Amaya Y, Kamatani N et al. (1997). "Identification of two mutations in human xanthine dehydrogenase gene responsible for classical type I xanthinuria". J. Clin. Invest. 99 (10): 2391–7. doi:10.1172/JCI119421. PMC 508078. PMID 9153281.
- Rouquette M, Stevens C, Blake DR et al. (1998). "Expression of xanthine oxidase activity in human endothelial cells as a function of cell density". Biochem. Soc. Trans. 25 (3): 532S. PMID 9388748.
- Newaz MA, Adeeb NN (2000). "Detection of xanthine oxidase in human plasma". Med. J. Malaysia 53 (1): 70–5. PMID 10968141.
- Martelin E, Palvimo JJ, Lapatto R, Raivio KO (2000). "Nuclear factor Y activates the human xanthine oxidoreductase gene promoter". FEBS Lett. 480 (2–3): 84–8. doi:10.1016/S0014-5793(00)01909-8. PMID 11034305.
- Stiborová M, Frei E, Sopko B et al. (2002). "Carcinogenic aristolochic acids upon activation by DT-diaphorase form adducts found in DNA of patients with Chinese herbs nephropathy". Carcinogenesis 23 (4): 617–25. doi:10.1093/carcin/23.4.617. PMID 11960915.
- Frederiks WM, Vreeling-Sindelárová H (2002). "Ultrastructural localization of xanthine oxidoreductase activity in isolated rat liver cells". Acta Histochem. 104 (1): 29–37. doi:10.1078/0065-1281-00629. PMID 11993848.
- Cejková J, Ardan T, Filipec M, Midelfart A (2003). "Xanthine oxidoreductase and xanthine oxidase in human cornea". Histol. Histopathol. 17 (3): 755–60. PMID 12168784.
PDB gallery
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1fiq: CRYSTAL STRUCTURE OF XANTHINE OXIDASE FROM BOVINE MILK
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1wyg: Crystal Structure of a Rat Xanthine Dehydrogenase Triple Mutant (C535A, C992R and C1324S)
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2ckj: HUMAN MILK XANTHINE OXIDOREDUCTASE
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UpToDate Contents
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English Journal
- Identification of a xanthinuria type I case with mutations of xanthine dehydrogenase in an Afghan child.
- Nakamura M, Yuichiro Y, Sass JO, Tomohiro M, Schwab KO, Takeshi N, Tatsuo H, Ichida K.SourceDepartment of Pathophysiology, Tokyo University of Pharmacy and Life Sciences, 1432-1 Horinouchi, Hachiouji-shi, Tokyo 192-0392, Japan.
- Clinica chimica acta; international journal of clinical chemistry.Clin Chim Acta.2012 Dec 24;414:158-60. doi: 10.1016/j.cca.2012.08.011. Epub 2012 Aug 17.
- Xanthinuria due to xanthine dehydrogenase (XDH) deficiency is a rare genetic disorder characterized by hypouricemia and the accumulation of xanthine in the urine. We have identified an Afghan girl whose xanthinuria could be classified as type I xanthinuria based on an allopurinol loading test. Three
- PMID 22981351
Japanese Journal
- Annual change in plasma xanthine oxidoreductase activity is associated with changes in liver enzymes and body weight
- Furuhashi Masato,Saitoh Shigeyuki,Shimamoto Kazuaki,Miura Tetsuji,Koyama Masayuki,Matsumoto Megumi,Murase Takayo,Nakamura Takashi,Higashiura Yukimura,Tanaka Marenao,Moniwa Norihito,Ohnishi Hirofumi
- Endocrine Journal, 2019
- … <p>Xanthine oxidoreductase (XOR), an enzyme of uric acid formation from hypoxanthine and xanthine, is recognized as a source of oxidative stress. …
- NAID 130007653209
- 植物のプリン分解:─最近の進展と見えてきたストレス適応における役割
- 渡邊 俊介,坂本 敦
- 植物の生長調節 53(2), 116-123, 2018
- … Notably, recent forward and reverse genetic studies have revealed the emerging role in stress tolerance, highlighting xanthine dehydrogenase as a modulator of reactive oxygen species homeostasis and the intermediate allantoin as a stress protectant. …
- NAID 130007553697
- <b>In vitro enhancement of ATP in human erythrocytes from a healthy subject and two patients with thalassemia and hemoglobinopathy.</b>
- Kamatani Naoyuki,Furihata Kenichi,Taniguchi Atsuo,Fukuuchi Tomoko,Yamaoka Noriko,Kaneko Kiyoko,Kanno Hitoshi
- 痛風と核酸代謝 42(1), 59-64, 2018
- <p><b>Objective:</b> To examine whether the supplementation of inosine augments ATP in vitro in human erythrocytes incubated in saline.</p><p><b>Methods:</b> …
- NAID 130007419211
Related Links
- Xanthine dehydrogenase (XDH) and xanthine oxidase (XOD) are single-gene products that exist in separate but interconvertible forms. XOD utilizes hypoxanthine or xanthine as a substrate and O 2 as a cofactor to ...
- Xanthine dehydrogenase belongs to the group of molybdenum-containing hydroxylases involved in the oxidative metabolism of purines. The encoded protein has been identified as a moonlighting protein based on its ability ...
- 147 (Diagnostic Reagent Grade) ASAHI KASEI ENZYMEST-134 XANTHINE DEHYDROGENASE [XDHⅡ] from Microorganism (Xanthine: NAD+ oxidoreductase, EC 1.17.1.4) Xanthine ...
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