シノリゾビウム、シノリゾビウム属、Sinorhizobium属
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出典(authority):フリー百科事典『ウィキペディア(Wikipedia)』「2013/01/24 19:36:54」(JST)
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Sinorhizobium |
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Sinorhizobium fredii strain USDA257 on an agar plate. |
Scientific classification |
Kingdom: |
Bacteria |
Phylum: |
Proteobacteria |
Class: |
Alphaproteobacteria |
Order: |
Rhizobiales |
Family: |
Rhizobiaceae |
Genus: |
Sinorhizobium/Ensifer
Chen et al. 1988/Casida 1982 |
Type species |
Sinorhizobium fredii/Ensifer adhaerens
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Species[14][15][16] |
Sinorhizobium abri Ogasawara et all. 2003[1][2]
Ensifer adhaerens Casida 1982[3]
Sinorhizobium americanum corrig. Toledo et al. 2003[4]
Sinorhizobium arboris Nick et al. 1999[5]
Sinorhizobium chiapanecum Rincón-Rosales et al. 2009[6]
Sinorhizobium fredii Scholla and Elkan 1984 emend. De Lajudie et al. 1994[7]
Ensifer garamanticusMerabet et al. 2010[8]
Sinorhizobium indiaense Ogasawara et all. 2003[1][2]
Sinorhizobium kostiense Nick et al. 1999[5]
Sinorhizobium kummerowiae Wei et al. 2002[9]
Sinorhizobium medicae Rome et al. 1996[10]
Sinorhizobium meliloti (Dangeard 1926) De Lajudie et al. 1994[11]
Ensifer mexicanus Lloret et al. 2007[12]
Ensifer numidicus Merabet et al. 2010[8]
Sinorhizobium saheli De Lajudie et al. 1994[11]
Ensifer sojae Li et al. 2010[13]
Sinorhizobium terangae corrig. De Lajudie et al. 1994[11]
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Sinorhizobium/Ensifer is a genus of nitrogen-fixing bacteria (rhizobia), three of which (Sinorhizobium meliloti,[17][18] Sinorhizobium medicae[19] and Sinorhizobium fredii[20]) have been sequenced.
Contents
- 1 Etymology
- 2 Proper Name
- 3 Deprecated Species
- 4 Phylogeny
- 5 References
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Etymology
Sinorhizobium is a combination of Medieval Latin sino, -a (which means "China"), Greek rhizo, -a (which means "root"), and New Latin bios (which means "life"). Thus the full name means "a bacterium living in a root in China".[7][21]
Ensifer is from the New Latin term ensifer, which means "sword-bearing" or "sword-bearer".[3]
Proper Name
The name Ensifer was published in 1982 and the name Sinorhizobium was published in 1988. By the rules of the Bacteriological Code (1990 Revision) of the International Committee on Systematics of Prokaryotes (ICSP), the older name (Ensifer) has priority.[22] In response to a request that the single extant species of Ensifer (Ensifer adhaerens) be moved to Sinorhizobium, a special ICSP subcommittee was formed to evaluate the request. It was ultimately ruled that Ensifer retained priority and that all Sinorhizobium species be transferred to the genus Ensifer.[23][24] However, both terms continue to be used in published scientific literature, with Sinorhizobium being the more common.
Deprecated Species
Two species have been described which have since been reclassified into existing species: Sinorhizobium morelense (now Ensifer adhaerens)[22][25] and Sinorhizobium xinjiangense (now Sinorhizobium fredii[26][27]—though there is some dissent[28]).
Phylogeny
The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN) [14][15] and National Center for Biotechnology Information (NCBI)[29] and the phylogeny is based on 16S rRNA-based LTP release 106 by The All-Species Living Tree Project [30]
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Ensifer mexicanus Lloret et al. 2011
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Sinorhizobium terangae De Lajudie et al. 1994
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Sinorhizobium saheli De Lajudie et al. 1994
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Sinorhizobium kostiensis Nick et al. 1999
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Sinorhizobium kummerowiae Wei et al. 2002
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Sinorhizobium fredii (Scholla and Elkan 1984) Chen et al. 1988[31]
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Sinorhizobium americanum corrig. Toledo et al. 2004
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Sinorhizobium arboris Nick et al. 1999
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Ensifer garamanticus Merabet et al. 2010
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Sinorhizobium meliloti (Dangeard 1926) De Lajudie et al. 1994
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Ensifer numidicus Merabet et al. 2010
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Ensifer adhaerens Casida 1982[31]
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References
- ^ a b Ogasawara, M., Suzuki, T., Mutoh, I., Annapurna, K., Arora, N. K., Nishimura, Y., and Maheshwari, D. K. (2003). "Sinorhizobium indiaense sp. nov. and Sinorhizobium abri sp. nov. isolated from tropical legumes, Sesbania rostrata and Abrus precatorius, respectively". Symbiosis 34 (1): 53–68.
- ^ a b Because no type strains have been submitted to international culture collections, these are not currently recognized as valid species.
- ^ a b L. E. Casida, Jr. (1982). "Ensifer adhaerens gen. nov., sp. nov.: A Bacterial Predator of Bacteria in Soil". Int J Syst Bacteriol 32 (3): 339–345. doi:10.1099/00207713-32-3-339. http://ijs.sgmjournals.org/cgi/content/abstract/32/3/339.
- ^ Toledo, I., Lloret, L., and Martínez-Romero, E. (2003). "Sinorhizobium americanus sp. nov., a new Sinorhizobium species nodulating native Acacia spp. in Mexico". Syst Appl Microbiol 26 (1): 54–64. doi:10.1078/072320203322337317. PMID 12747410. http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B7GVX-4DS35B4-7&_user=456938&_rdoc=1&_fmt=&_orig=search&_sort=d&_docanchor=&view=c&_searchStrId=997433380&_rerunOrigin=google&_acct=C000021830&_version=1&_urlVersion=0&_userid=456938&md5=37460ad4db2b6f219ce8783ad5bdd19f.
- ^ a b Nick, G., de Lajudie, P., Eardly, B. D., Suomalainen, S., Paulin, L., Zhang, X., Gillis, M., and Lindström, K (1999). "Sinorhizobium arboris sp. nov. and Sinorhizobium kostiense sp. nov., isolated from leguminous trees in Sudan and Kenya". Int J Syst Bacteriol 49 (Pt. 4): 1359–1368. doi:10.1099/00207713-49-4-1359. PMID 10555313. http://ijs.sgmjournals.org/cgi/reprint/49/4/1359.
- ^ Reiner Rincón-Rosales, Lourdes Lloret, Edith Ponce, and Esperanza Martínez-Romero (2009). "Rhizobia with different symbiotic efficiencies nodulate Acaciella angustissima in Mexico, including Sinorhizobium chiapanecum sp. nov. which has common symbiotic genes with Sinorhizobium mexicanum". Syst Appl Microbiol 67 (1): 103–117. doi:10.1111/j.1574-6941.2008.00590.x. PMC 2784085. PMID 19120461. http://www3.interscience.wiley.com/cgi-bin/fulltext/121427775/HTMLSTART.
- ^ a b Chen, W. X., Yan, G. H., and Li, J. L. (1988). "Numerical taxonomic study of fast-growing soybean rhizobia and a proposal that Rhizobium fredii be assigned to Sinorhizobium gen. nov". Int J Syst Bacteriol 38 (4): 392–397. doi:10.1099/00207713-38-4-392. http://ijs.sgmjournals.org/cgi/content/abstract/38/4/392.
- ^ a b C. Merabet, M. Martens, M. Mahdhi, F. Zakhia, A. Sy, C. Le Roux, O. Domergue, R. Coopman, A. Bekki, M. Mars, A. Willems and P. de Lajudie (2009). "Multi Locus Sequence Analysis of root nodule isolates from Lotus arabicus (Senegal), Lotus creticus, Argyrolobium uniflorum and Medicago sativa (Tunisia) and description of Ensifer numidicus sp. nov. and Ensifer garamanticus sp. nov". Int J Syst Evol Microbiol (Epub ahead of print) (Pt 3): 1–33. doi:10.1099/ijs.0.012088-0. PMID 19656922. http://ijs.sgmjournals.org/cgi/rapidpdf/ijs.0.012088-0v1.pdf.
- ^ Wei, G. H., Wang, E. T., Tan, Z. Y., Zhu, M. E, and Chen, W. X. (2002). "Rhizobium indigoferae sp. nov. and Sinorhizobium kummerowiae sp. nov., respectively isolated from Indigofera spp. and Kummerowia stipulacea". Int J Syst Evol Microbiol 52 (Pt. 6): 2231–2239. doi:10.1099/ijs.0.02030-0. PMID 12508892. http://ijs.sgmjournals.org/cgi/reprint/52/6/2231.
- ^ Rome, S., Fernandez, M. P., Brunel, B., Normand, P., Cleyet-Marel, J. C. (1996). "Sinorhizobium medicae sp. nov., isolated from annual Medicago spp". Int J Syst Bacteriol 46 (4): 972–980. doi:10.1099/00207713-46-4-972. PMID 8863426. http://ijs.sgmjournals.org/cgi/reprint/46/4/972.
- ^ a b c Philippe de Lajudie, Anne Willems, Bruno Pot, Dirk Dewettinck, Gloria Maestrojuan, Marc Neyra, Matthew David Collins, Bernard Dreyfus, Karel Kersters, and Monique Gillis (1994). "Polyphasic Taxonomy of Rhizobia: Emendation of the Genus Sinorhizobium and Description of Sinorhizobium meliloti comb. nov., Sinorhizobium saheli sp. nov., and Sinorhizobium teranga sp. nov". Int J Syst Bacteriol 44 (4): 715–733. doi:10.1099/00207713-44-4-715. http://ijs.sgmjournals.org/cgi/content/abstract/44/4/715.
- ^ Lloret, L., Ormeño-Orrillo, E., Rincón, R., Martínez-Romero, J., Rogel-Hernández, M. A., and Martínez-Romero, E. (2007). "Ensifer mexicanus sp. nov. a new species nodulating Acacia angustissima (Mill.) Kuntze in Mexico". FEMS Microbiology Ecology 30 (4): 280–290. doi:10.1016/j.syapm.2006.12.002. PMID 17293074. http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B7GVX-4N1SJRY-1&_user=456938&_rdoc=1&_fmt=&_orig=search&_sort=d&_docanchor=&view=c&_acct=C000021830&_version=1&_urlVersion=0&_userid=456938&md5=d2b59bd9730479856d895adfe543fdf7.
- ^ Li, Q. Q, Tao Wang, E. T., Chang, Y. L., Zhang, Y. Z., Zhang, Y. M., Sui, X. H., Chen, W. F., and Chen, W. X. (2010). "Ensifer (Sinorhizobium) sojae sp. nov., isolated from root nodules of Glycine max grown in saline-alkaline soils in Hebei province of China". Int J Syst Evol Microbiol 49 (8): 1359–1368. doi:10.1099/ijs.0.025049-0. PMID 20851917. http://ijs.sgmjournals.org/content/early/2010/09/17/ijs.0.025049-0.long.
- ^ a b J.P. Euzéby. "Sinorhizobium". List of Prokaryotic names with Standing in Nomenclature (LPSN) [1]. http://www.bacterio.cict.fr/s/sinorhizobium.html. Retrieved 2012-05-02.
- ^ a b J.P. Euzéby. "Ensifer". List of Prokaryotic names with Standing in Nomenclature (LPSN) [2]. http://www.bacterio.cict.fr/e/ensifer.html. Retrieved 2012-05-02.
- ^ Garrity, George M.; Brenner, Don J.; Krieg, Noel R.; Staley, James T. (eds.) (2005). Bergey's Manual of Systematic Bacteriology, Volume Two: The Proteobacteria, Part C: The Alpha-, Beta-, Delta-, and Epsilonproteobacteria. New York, New York: Springer. pp. 354–361. ISBN 978-0-387-24145-6.
- ^ Galibert, F. et al. (2001). "The composite genome of the legume symbiont Sinorhizobium meliloti". Science 293 (5530): 668–672. doi:10.1126/science.1060966. PMID 11474104. http://www.sciencemag.org/cgi/content/full/293/5530/668.
- ^ NCBI Genome Page for Sinorhizobium meliloti
- ^ NCBI Genome Page for Sinorhizobium medicae
- ^ Rhizobium sp. strain NGR234 possesses a remarkable number of secretion systems.
- ^ List of Prokaryotic names with Standing in Nomenclature—Genus Sinorhizobium
- ^ a b Young, J. M. (2003). "The genus name Ensifer Casida 1982 takes priority over Sinorhizobium Chen et al. 1988, and Sinorhizobium morelense Wang et al. 2002 is a later synonym of Ensifer adhaerens Casida 1982. Is the combination Sinorhizobium adhaerens (Casida 1982) Willems et al. 2003 legitimate? Request for an Opinion". Int J Syst Bacteriol 53 (6): 2107–2110. doi:10.1099/ijs.0.02665-0. http://ijs.sgmjournals.org/cgi/content/abstract/53/6/2107.
- ^ Lindström, K., and Martínez-Romero, M. E. (2002). "International Committee on Systematics of Prokaryotes Subcommittee on the taxonomy of Agrobacterium and Rhizobium. Minutes of the meeting, 4 July 2001, Hamilton, Canada". Int J Syst Bacteriol 52 (6): 2337. http://ijs.sgmjournals.org/cgi/reprint/52/6/2337.pdf.
- ^ Judicial Commission of the International Committee on Systematics of Prokaryotes (2008). "The genus name Sinorhizobium Chen et al. 1988 is a later synonym of Ensifer Casida 1982 and is not conserved over the latter genus name, and the species name Sinorhizobium adhaerens is not validly published. Opinion 84". Int J Syst Bacteriol 58 (Pt 8): 1973. doi:10.1099/ijs.0.2008/005991-0. PMID 18676490. http://ijs.sgmjournals.org/cgi/content/abstract/58/8/1973.
- ^ Wang, E. T., Tan, Z. Y., Willems, A., Fernández-López, M., Reinhold-Hurek, B., and Martínez-Romero, E. (2002). "Sinorhizobium morelense sp. nov., a Leucaena leucocephala-associated bacterium that is highly resistant to multiple antibiotics". Int J Syst Evol Microbiol 52 (Pt. 5): 1687–1693. doi:10.1099/ijs.0.01954-0. PMID 12361275. http://ijs.sgmjournals.org/cgi/content/abstract/52/5/1687.
- ^ Peng, G. X., Tan, Z. Y., Wang, E. T., Reinhold-Hurek, B., Chen, W. F., and Chen, W. X. (2002). "Identification of isolates from soybean nodules in Xinjiang Region as Sinorhizobium xinjiangense and genetic differentiation of S. xinjiangense from Sinorhizobium fredii". Int J Syst Evol Microbiol 52 (Pt. 2): 457–462. doi:10.1099/ijs.0.01921-0. PMID 11931157. http://ijs.sgmjournals.org/cgi/content/abstract/52/2/457.
- ^ Martens, M., Dawyndt, P., Coopman, R., Gillis, M., de Vos, P., and Willems, A. (2008). "Advantages of multilocus sequence analysis for taxonomic studies: a case study using 10 housekeeping genes in the genus Ensifer (including former Sinorhizobium)". Int J Syst Bacteriol 58 (Pt 1): 200–214. doi:10.1099/ijs.0.65392-0. PMID 18175710. http://ijs.sgmjournals.org/cgi/content/abstract/58/1/200.
- ^ Miet Martens, Manuel Delaere, Renata Coopman, Paul De Vos, Monique Gillis, and Anne Willems (2007). "Multilocus sequence analysis of Ensifer and related taxa". Int J Syst Evol Microbiol 57 (Pt 3): 489–503. doi:10.1099/ijs.0.64344-0. PMID 17329774. http://ijs.sgmjournals.org/cgi/content/full/57/3/489.
- ^ Sayers et al.. "Sinorhizobium/Ensifer group". National Center for Biotechnology Information (NCBI) taxonomy database [3]. http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Tree&id=227292&lvl=4&lin=f&keep=1&srchmode=1&unlock. Retrieved 2012-05-02.
- ^ All-Species Living Tree Project."16S rRNA-based LTP release 106 (full tree)". Silva Comprehensive Ribosomal RNA Database [4]. http://www.arb-silva.de/fileadmin/silva_databases/living_tree/LTP_release_106/LTPs106_SSU_tree.pdf. Retrieved 2012-05-02.
- ^ a b These are the type species for the genus, depending on which genus name is preferred.
English Journal
- Monitoring the microbial community during solid-state acetic acid fermentation of Zhenjiang aromatic vinegar.
- Xu W, Huang Z, Zhang X, Li Q, Lu Z, Shi J, Xu Z, Ma Y.SourceLaboratory of Pharmaceutical Engineering, School of Medicine and Pharmaceutics, Jiangnan University, Wuxi 214122, People's Republic of China.
- Food microbiology.Food Microbiol.2011 Sep;28(6):1175-81. Epub 2011 Apr 15.
- Zhenjiang aromatic vinegar is one of the most famous Chinese traditional vinegars. In this study, change of the microbial community during its fermentation process was investigated. DGGE results showed that microbial community was comparatively stable, and the diversity has a disciplinary series of
- PMID 21645817
- Concomitant degradation of bisphenol A during ultrasonication and Fenton oxidation and production of biofertilizer from wastewater sludge.
- Mohapatra DP, Brar SK, Tyagi RD, Surampalli RY.SourceINRS-ETE, Universite du Quebec, Quebec, Canada.
- Ultrasonics sonochemistry.Ultrason Sonochem.2011 Sep;18(5):1018-27. Epub 2011 Apr 3.
- Degradation of bisphenol A (BPA), an endocrine disruptor, from wastewater sludge (WWS) has attracted great interest recently. In the present study, the effects of different pre-treatment methods, including ultrasonication (US), Fenton's oxidation (FO) and ferro-sonication (FS) was assessed in terms
- PMID 21463964
Japanese Journal
- Multiple occupancy of nodules by nodulating rhizobia on field-grown soybeans with attendance of Sinorhizobium spp.(Soil Biology)
- NGUYEN Minh Thi,AKIYOSHI Kazue,NAKATSUKASA Masamichi,SAEKI Yuichi,YOKOYAMA Kazuhira
- Soil science and plant nutrition 56(3), 382-389, 2010-06
- … An increase in the relative abundance of isolates belonging to Sinorhizobium fredii (Ensifer fredii) occurred concomitantly with the increase in the proportion of nodules with multiple occupancy. …
- NAID 110008144333
- The bacA gene homolog, mlr7400, in Mesorhizobium loti MAFF303099 is dispensable for symbiosis with Lotus japonicus but partially capable of supporting the symbiotic function of bacA in Sinorhizobium meliloti (Special issue articles: Symbiosis)
- Maruya Jumpei,Saeki Kazuhiko
- Plant and Cell Physiology 51(9), 1443-1452, 2010-09
- NAID 40017292793
Related Links
- Sinorhizobium meliloti is a Gram-negative nitrogen-fixing bacterium (rhizobium). It forms a symbiotic relationship with legumes from the genera Medicago, Melilotus and Trigonella, including the model legume Medicago truncatula. ...
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