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- plan secretly, usually something illegal; "They plotted the overthrow of the government"
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- a secret scheme to do something (especially something underhand or illegal); "they concocted a plot to discredit the governor"; "I saw through his little game from the start" (同)secret plan, game
- a chart or map showing the movements or progress of an object
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- devise the sequence of events in (a literary work or a play, movie, or ballet); "the writer is plotting a new novel"
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Wikipedia preview
出典(authority):フリー百科事典『ウィキペディア(Wikipedia)』「2018/06/16 03:00:03」(JST)
[Wiki en表示]
The Scatchard equation is an equation used in molecular biology for calculating the affinity constant of a ligand with a protein.[1]
It is named after the American chemist George Scatchard[2] and is sometimes referred to as the Rosenthal-Scatchard equation.[citation needed]
Contents
- 1 Equation
- 2 Scatchard plot
- 3 References
- 4 Further reading
Equation
The Scatchard equation is given by
where
is the ratio of the concentration of bound ligand to total available binding sites, and n is the number of binding sites per protein molecule.
Ka is the association (affinity) constant from the equation
Plotting these data, r/[L] vs r, yields the Scatchard plot with a slope -Ka and a Y-intercept of nKa. Relative binding affinities between two sites can be distinguished with a line showing identical affinity and a curve showing different affinities.
Scatchard plot
Scatchard Plot showing positive, negative, and no cooperativity.
A Scatchard plot is a plot of the ratio of concentrations of bound ligand to unbound ligand versus the bound ligand concentration. It is a method for analyzing data for freely reversible ligand/receptor binding interactions. The plot yields a straight line of slope -K, where K is the affinity constant for ligand binding. The affinity constant is the inverse of the dissociation constant. The intercept on the X axis is Bmax.[2] It is sometimes the case that binding data does not form a straight line when plotted in a Scatchard plot. Such is the case when ligand bound to substrate is not allowed to achieve equilibrium before the binding is measured or binding is cooperative.[3]
In a Scatchard plot, assumptions of independence in linear regression model is violated because B (bound ligand) is used in the X and Y axes. Generally, Scatchard and Lineweaver-Burk plots are outdated. Their original intention was to transform the data into linear representations of the original data such that linear regression methods could be applied. These transformations frequently distort experimental error and can be misleading if results are not accurate.[4]
References
- ^ Scatchard, George (1949). "The Attraction of Proteins for Small Molecules and Ions". Annals of the New York Academy of Sciences. 51 (4): 660–672. doi:10.1111/j.1749-6632.1949.tb27297.x.
- ^ a b Voet, Donald; (1995). Biochemistry, 3rd Ed. John Wiley & Sons, Inc. ISBN 0-471-39223-5.
- ^ Gross, David. Physical Chemistry: Applications in the Life Sciences. [permanent dead link]
- ^ [not in citation given] "GraphPad FAQ: Saturation Binding Curves and Scatchard Plots".
Further reading
- lecture with derivation (Archived version at web.archive.org)
UpToDate Contents
全文を閲覧するには購読必要です。 To read the full text you will need to subscribe.
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…concentrations of radiolabeled steroid and the results used to create a multipoint Scatchard plot. From this Scatchard plot, the total concentration of receptor protein in the cytosol is obtained and is usually…
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English Journal
- Urea Based Dipodal Fluorescence Receptor for Sensing of Fe3+ Ion in Semi-Aqueous Medium.
- Fegade U, Sharma H, Attarde S, Singh N, Kuwar A.SourceSchool of Chemical Sciences, North Maharashtra University, Jalgaon, 425001, MS, India.
- Journal of fluorescence.J Fluoresc.2013 Sep 27. [Epub ahead of print]
- Urea based fluorescent chemosensor 1 was synthesized. Receptor 1 shows unique selectivity for the Fe3+ion and no such significant response was noticed with other metal ions (Cr3+, Mn2+, Co2+, Ni2+, Cu2+, Zn2+, Cd2+, Hg2+, Pb2+ and Bi3+) in DMSO/H2O (50:50,v/v) semi-aqueous solution. The binding feat
- PMID 24072499
- High-Throughput Screening Assays for Estrogen Receptor by Using Coumestrol, a Natural Fluorescence Compound.
- Wang C, Li C, Zhou H, Huang J.Source1College of Life Sciences, Wuhan University, Wuhan, China.
- Journal of biomolecular screening.J Biomol Screen.2013 Sep 9. [Epub ahead of print]
- Estrogen receptor (ER) is a ligand-inducible transcriptional factor involving in cell growth, differentiation, and diseases, so detection and identification of compounds having estrogenic effects are of great importance in the drug discovery industry. We have developed and validated a rapid, simple,
- PMID 24019253
Japanese Journal
- Establishment of in Vitro Binding Assay of High Mobility Group Box-1 and S100A12 to Receptor for Advanced Glycation Endproducts: Heparin's Effect on Binding
- Liu Rui,Mori Shuji,Wake Hidenori,Zhang Jiyong,Liu Keyue,Izushi Yasuhisa,Takahashi Hideo K.,Peng Bo,Nishibori Masahiro
- Acta Medica Okayama 63(4), 203-211, 2009-08
- … Scatchard plot analysis showed that rsRAGE had higher affinity for rhHMGB1 than for rhS100A12. …
- NAID 120002312782
Related Links
- In this plot, the X-axis is specific binding and the Y-axis is specific binding divided by free radioligand concentration. It is possible to estimate the Bmax and Kd from a Scatchard plot (Bmax is the X intercept; Kd is the negative reciprocal of the ...
- Yet Scatchard analysis remains a good way to visualize saturation binding data. We'll show how to combine these techniques, creating a conventional Scatchard plot, but superimposing a line that reflects the best possible estimates of Kd and ...
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