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関: Methanomicrobiaceae

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出典(authority):フリー百科事典『ウィキペディア（Wikipedia）』「2015/07/22 16:58:35」(JST)

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In the taxonomy of microorganisms, the Methanomicrobiales are an order of the Methanomicrobia.^[1] Methanomicrobiales are strictly carbon dioxide reducing methanogens, using hydrogen or formate as the reducing agent.^[2] As seen from the phylogenetic tree based on the 'The All-Species Living Tree' Project the family Methanomicrobiaceae is highly polyphyletic within the Methanomicrobiales.

Phylogeny

The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN)^[3] and National Center for Biotechnology Information (NCBI)^[4] and the phylogeny is based on 16S rRNA-based LTP release 106 by 'The All-Species Living Tree' Project.^[5]

Methanogenium

	?M. cariaci Romesser et al. 1981 emend. Maestrojuán et al. 1990 (type sp.)

	?M. frigidum Franzmann et al. 1997

	M. marinum Chong et al. 2003

	M. organophilum Widdel et al. 1989

Methanoplanus

	M. endosymbiosus van Bruggen et al. 1986

	M. limicola Wildgruber et al. 1984 (type sp.)

Methanomicrobium mobile (Paynter and Hungate 1968) Balch and Wolfe 1981

	Methanoplanus petrolearius Ollivier et al. 1998

	Methanolacinia paynteri (Rivard et al. 1984) Zellner et al. 1990

Methanoculleus

M. receptaculi Cheng et al. 2008

M. palmolei Zellner et al. 1998

M. chikugoensis Dianou et al. 2001

	M. marisnigri (Romesser et al. 1981) Maestrojuán et al. 1990

	M. submarinus Mikucki et al. 2003

M. bourgensis (Ollivier et al. 1986) Maestrojuán et al. 1990 emend. Asakawa and Nagaoka 2003 (type sp.)

	M. hydrogenitrophicus Tian et al. 2010

	M. thermophilus (Rivard and Smith 1982) Maestrojuán et al. 1990 emend. Spring et al. 2005

Methanosphaerula palustris Cadillo-Quiroz et al. 2009

Methanolinea tarda Imachi et al. 2008

Methanospirillum

	M. hungatei Ferry et al. 1974 emend. Iino et al. 2010

	M. lacunae Iino et al. 2010

Methanoregula

	M. boonei Bräuer et al. 2011 (type sp.)

	M. formicica Yashiro et al. 2011

Methanofollis

	M. formosanus Wu et al. 2005

	M. aquaemaris Lai and Chen 2001

M. ethanolicus Imachi et al. 2009

	M. liminatans (Zellner et al. 1990) Zellner et al. 1999

	M. tationis (Zabel et al. 1986) Zellner et al. 1999 (type sp.)

Methanocalculus

M. pumilus Mori et al. 2000

M. taiwanensis Lai et al. 2002

	M. chunghsingensis Lai et al. 2004

	M. halotolerans Ollivier et al. 1998 (type sp.)

Methanocorpusculum

?M. sinense Zellner et al. 1989

M. labreanum Zhao et al. 1989

	M. bavaricum Zellner et al. 1989

	M. parvum Zellner et al. 1988 (type sp.)

Notes:
♠ Strains found at the National Center for Biotechnology Information (NCBI) but not listed in the List of Prokaryotic names with Standing in Nomenclature (LPSN)

References

^ See the NCBI webpage on Methanomicrobiales. Data extracted from the "NCBI taxonomy resources". National Center for Biotechnology Information. Retrieved 2007-03-19.
^ D.R. Boone et al. (2001). Bergey's Manual of Systematic Bacteriology (2nd ed.). New York: Springer.
^ J.P. Euzéby. "Methanomicrobiaceae". List of Prokaryotic names with Standing in Nomenclature (LPSN) [1]. Retrieved 2011-11-17.
^ Sayers et al. "Methanomicrobiaceae". National Center for Biotechnology Information (NCBI) taxonomy database [2]. Retrieved 2011-06-05.
^ 'The All-Species Living Tree' Project."16S rRNA-based LTP release 106 (full tree)" (PDF). Silva Comprehensive Ribosomal RNA Database [3]. Retrieved 2011-11-17.

External links

NCBI taxonomy page for Methanomicrobiales
Search Tree of Life taxonomy pages for Methanomicrobiales
Search Species2000 page for Methanomicrobiales
MicrobeWiki page for Methanomicrobiales
LSPN page for Methanomicrobiales

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English Journal

Evidence of syntrophic acetate oxidation by Spirochaetes during anaerobic methane production.

Lee SH1, Park JH2, Kim SH3, Yu BJ4, Yoon JJ4, Park HD5.
Bioresource technology.Bioresour Technol.2015 Aug;190:543-9. doi: 10.1016/j.biortech.2015.02.066. Epub 2015 Feb 21.
To search for evidence of syntrophic acetate oxidation by cluster II Spirochaetes with hydrogenotrophic methanogens, batch reactors seeded with five different anaerobic sludge samples supplemented with acetate as the sole carbon source were operated anaerobically. The changes in abundance of the clu
PMID 25739997

Co-digestion of wheat and rye bread suspensions with source-sorted municipal biowaste.

Li C1, Mörtelmaier C2, Winter J3, Gallert C4.
Waste management (New York, N.Y.).Waste Manag.2015 Jun;40:63-71. doi: 10.1016/j.wasman.2015.03.024. Epub 2015 Apr 3.
Acidification of wheat bread (WBS), rye bread (RBS) and fresh biowaste suspensions (FBS), leading to lactate+acetate, lactate+acetate+n-buyrate, and acetate+propionate+n-butyrate, respectively, and biogas production as well as population dynamics were investigated. Co-fermentation of FBS (14kgm(-3)d
PMID 25843354

Evidence of active methanogen communities in shallow sediments of the sonora margin cold seeps.

Vigneron A1, L'Haridon S2, Godfroy A3, Roussel EG4, Cragg BA5, Parkes RJ5, Toffin L3.
Applied and environmental microbiology.Appl Environ Microbiol.2015 May 15;81(10):3451-9. doi: 10.1128/AEM.00147-15. Epub 2015 Mar 13.
In the Sonora Margin cold seep ecosystems (Gulf of California), sediments underlying microbial mats harbor high biogenic methane concentrations, fueling various microbial communities, such as abundant lineages of anaerobic methanotrophs (ANME). However, the biodiversity, distribution, and metabolism
PMID 25769831

Japanese Journal

Methanogenic archaeal communities in paddy field soils in north-east China as evaluated by PCR-DGGE, sequencing and real-time PCR analyses(Soil Biology)

WANG Guanghua,WATANABE Takeshi,JIN Jian,LIU Xiaobing,KIMURA Makoto,ASAKAWA Susumu
Soil science and plant nutrition 56(6), 831-838, 2010-12
… Phylogenetic analysis of the sequenced 16S rRNA genes indicated that methanogenic archaea belonging to Methanosaetaceae, Methanocellales, Methanomicrobiales and Methanosarcinaceae dominated the paddy fields in NE China. …
NAID 110008144380

Vertical changes in bacterial and archaeal communities with soil depth in Japanese paddy fields(Soil Biology)

WATANABE Takeshi,WANG Guanghua,TAKI Katsutoshi,OHASHI Yoshinori,KIMURA Makoto,ASAKAWA Susumu
Soil science and plant nutrition 56(5), 705-715, 2010-10
… Sequencing analysis of representative DGGE bands of the archaeal communities showed that diverse methanogens belonging to members of Methanomicrobiales, Methanosarcina spp., Methanosaeta spp., Methanocellales and Methanobacteriaceae inhabited the plowed soil layer, whereas uncultured members in the cluster ZC-I group of Methanosarcinales were more predominant beneath the plowed soil layer. …
NAID 110008144367

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「Methanomicrobiaceae」

Methanomicrobiales
Scientific classification
Domain:	Archaea
Kingdom:	Euryarchaeota
Phylum:	Euryarchaeota
Class:	Methanomicrobia
Order:	Methanomicrobiales
Binomial name
	Methanomicrobiales; Balch and Wolfe 1981
Families
	Methanocalculus Ollivier et al. 1998; Methanolinea Imachi et al. 2008; Methanoregula Bräuer et al. 2011; Methanocorpusculaceae Methanocorpusculum Zellner et al. 1988 emend. Xun et al. 1989; ; Methanospirillaceae Methanospirillum Ferry et al. 1974 emend. Iino et al. 2010; ; Methanomicrobiaceae Methanoculleus Maestrojuán et al. 1990; Methanofollis Zellner et al. 1999; Methanogenium Romesser et al. 1981 emend. Spring et al. 2005; Methanolacinia Zellner et al. 1990; Methanomicrobium Balch and Wolfe 1981; Methanoplanus Wildgruber et al. 1984; Methanosphaerula Cadillo-Quiroz et al. 2009; ;