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A membrane transport protein (or simply transporter) is a membrane protein[1] involved in the movement of ions, small molecules, or macromolecules, such as another protein, across a biological membrane. Transport proteins are integral transmembrane proteins; that is they exist permanently within and span the membrane across which they transport substances. The proteins may assist in the movement of substances by facilitated diffusion or active transport. The two main types of proteins involved in such transport are broadly categorized as either channels or carriers.
Contents
- 1 Difference between channels and carriers
- 2 Active transport
- 3 Facilitated diffusion
- 4 Types
- 4.1 1: Channels/pores
- 4.2 2: Electrochemical potential-driven transporters
- 4.3 3: Primary active transporters
- 4.4 4: Group translocators
- 4.5 5: Electron carriers
- 5 Examples
- 6 Pathology
- 7 See also
- 8 References
- 9 External links
Difference between channels and carriers
A carrier is not open simultaneously to both the extracellular and intracellular environments. Either its inner gate is open, or outer gate is open. In contrast, a channel can be open to both environments at the same time, allowing the solutes it transports to diffuse without interruption. Carriers have binding sites, but pores and channels do not.[2][3][4] When a channel is opened, millions of ions can pass through the membrane per second, but only 100 to 1000 molecules typically pass through a carrier molecule in the same time.[5] Each carrier protein is designed to recognize only one substance or one group of very similar substances. Research has correlated defects in specific carrier proteins with specific diseases.[6]
Active transport
Main article: Active transport
The action of the sodium-potassium pump is an example of primary active transport. The two carrier proteins on the left are using ATP to move sodium out of the cell against the concentration gradient. The proteins on the right are using secondary active transport to move potassium into the cell.
Active transport is the movement of a substance across a membrane against its concentration gradient. This is usually to accumulate high concentrations of molecules that a cell needs, such as glucose or amino acids. When the lipid bilayer is impermeable to the molecule needing transport, active transport is also necessary. If the process uses chemical energy, such as adenosine triphosphate (ATP), it is called primary active transport. Secondary active transport involves the use of an electrochemical gradient, and does not use energy produced in the cell.[7] Unlike channel proteins which only transport substances through membranes passively, carrier proteins can transport ions and molecules either passively through facilitated diffusion, or via secondary active transport.[8] A carrier protein is required to move particles from areas of low concentration to areas of high concentration. These carrier proteins have receptors that bind to a specific molecule (substrate) needing transport. The molecule or ion to be transported (the substrate) must first bind at a binding site at the carrier molecule, with a certain binding affinity. Following binding, and while the binding site is facing the same way, the carrier will capture or occlude (take in and retain) the substrate within its molecular structure and cause an internal translocation so that the opening in the protein now faces the other side of the plasma membrane.[9] The carrier protein substrate is released at that site, according to its binding affinity there.
Facilitated diffusion
Main article: Facilitated diffusion
Facilitated diffusion in cell membrane, showing ion channels (left) and carrier proteins (three on the right).
Facilitated diffusion is the passage of molecules or ions across a biological membrane through specific transport proteins and requires no energy input. Facilitated diffusion is used especially in the case of large polar molecules and charged ions; once such ions are dissolved in water they cannot diffuse freely across cell membranes due to the hydrophobic nature of the fatty acid tails of the phospholipids that make up the bilayers. The type of carrier proteins used in facilitated diffusion is slightly different from those used in active transport. They are still transmembrane carrier proteins, but these are gated transmembrane channels, meaning they do not internally translocate, nor require ATP to function. The substrate is taken in one side of the gated carrier, and without using ATP the substrate is released into the cell. They may be used as potential biomarkers
Types
(Grouped by Transporter Classification database categories)
1: Channels/pores
- α-helical protein channels such as voltage-gated ion channel (VIC), ligand-gated ion channels(LGICs)
- β-barrel porins such as aquaporin
- channel-forming toxins, including colicins, diphtheria toxin, and others
- Nonribosomally synthesized channels such as gramicidin
- Holins; which function in export of enzymes that digest bacterial cell walls in an early step of cell lysis.
Facilitated diffusion occurs in and out of the cell membrane via channels/pores and carriers/porters.
Note:
Channels are either in open state or closed state. When a channel is opened with a slight conformational switch, it is open to both environment simultaneously (extracellular and intracellular)
Pores are continuously open to these both environment, because they do not undergo conformational changes. They are always open and active.
2: Electrochemical potential-driven transporters
- 2.A: Porters ( uniporters, symporters, antiporters)
- Excitatory amino acid transporters (EAATs)
- EAAT1
- EAAT2
- EAAT3
- EAAT4
- EAAT5
- Glucose transporter
- Monoamine transporters, including:
- Dopamine transporter (DAT)
- Norepinephrine transporter (NET)
- Serotonin transporter (SERT)
- Vesicular monoamine transporters (VMAT)
- Adenine nucleotide translocator (ANT)
- 2.B: Nonribosomally synthesized porters, such as
- The Nigericin (Nigericin) Family
- The Ionomycin (Ionomycin) Family
- 2.C: Ion-gradient-driven energizers
3: Primary active transporters
- 3.A: P-P-bond-hydrolysis-driven transporters :
- ATP-binding cassette transporter (ABC transporter), such as MDR, CFTR
- V-type ATPase ; ( "V" related to vacuolar ).
- P-type ATPase ; ( "P" related to phosphorylation), such as :
- Na+/K+-ATPase
- Plasma membrane Ca2+ ATPase
- Proton pump
- F-type ATPase; ("F" related to factor), including: mitochondrial ATP synthase, chloroplast ATP synthase1
- 3.B: Decarboxylation-driven transporters
- 3.C: Methyltransfer-driven transporters
- 3.D: Oxidoreduction-driven transporters
- 3.E: Light absorption-driven transporters, such as rhodopsin
4: Group translocators
The group translocators provide a special mechanism for the phosphorylation of sugars as they are transported into bacteria (PEP group translocation)
5: Electron carriers
The transmembrane electron transfer carriers in the membrane include two-electron carriers, such as the disulfide bond oxidoreductases (DsbB and DsbD in E. coli) as well as one-electron carriers such as NADPH oxidase. Often these redox proteins are not considered transport proteins.
Examples
Each carrier protein, even within the same cell membrane, is specific to one type or family of molecules. For example, GLUT1 is a named carrier protein found in almost all animal cell membranes that transports glucose across the bilayer. Other specific carrier proteins also help the body function in important ways. Cytochromes operate in the electron transport chain as carrier proteins for electrons.[7]
Pathology
A number of inherited diseases involve defects in carrier proteins in a particular substance or group of cells. Cysteinuria (cysteine in the urine and the bladder) is such a disease involving defective cysteine carrier proteins in the kidney cell membranes. This transport system normally removes cysteine from the fluid destined to become urine and returns this essential amino acid to the blood. When this carrier malfunctions, large quantities of cysteine remain in the urine, where it is relatively insoluble and tends to precipitate. This is one cause of urinary stones.[10] Some vitamin carrier proteins have been shown to be overexpressed in patients with malignant disease. For example, levels of riboflavin carrier protein (RCP) have been shown to be significantly elevated in people with breast cancer.[11]
See also
- Cotransport
- Cotransporter
- Ion channel
- Permease
- P-loop
- Solute carrier family (classification)
- TC number (classification)
- Translocase
- Vesicular transport protein
References
- ^ Membrane transport proteins at the US National Library of Medicine Medical Subject Headings (MeSH)
- ^ Sadava, David, et al. Life, the Science of Biology, 9th Edition. Macmillan Publishers, 2009. ISBN 1-4292-1962-9. p. 119.
- ^ Cooper, Geoffrey (2009). The Cell: A Molecular Approach. Washington, DC: ASM Press. p. 62. ISBN 9780878933006.
- ^ Thompson, Liz A. Passing the North Carolina End of Course Test for Biology. American Book Company, Inc. 2007. ISBN 1-59807-139-4. p. 97.
- ^ Assmann, Sarah (2015). "Solute Transport". In Taiz, Lincoln; Zeiger, Edward. Plant Physiology and Development. Sinauer. p. 151.
- ^ Sadava, David, Et al. Life, the Science of Biology, 9th Edition. Macmillan Publishers, 2009. ISBN 1-4292-1962-9. p. 119.
- ^ a b Ashley, Ruth. Hann, Gary. Han, Seong S. Cell Biology. New Age International Publishers. ISBN 8122413978. p. 113.
- ^ Taiz, Lincoln. Zeigler, Eduardo. Plant Physiology and Development. Sinauer Associates, 2015. ISBN 978-1-60535-255-8. pp. 151.
- ^ Kent, Michael. Advanced Biology. Oxford University Press US, 2000. ISBN 0-19-914195-9. pp. 157–158.
- ^ Sherwood, Lauralee. 7th Edition. Human Physiology. From Cells to Systems. Cengage Learning, 2008. p. 67
- ^ Rao, PN, Levine, E et al. Elevation of Serum Riboflavin Carrier Protein in Breast Cancer. Cancer Epidemiol Biomarkers Prev. Volume 8 No 11. pp. 985–990
External links
- "Transport protein" at Dorland's Medical Dictionary
- DDI Regulatory Guidance Request a guide to drug-drug interaction regulatory recommendations.
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Proteins: carrier proteins
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| Fatty acid |
- FABP1
- FABP2
- FABP3
- FABP4
- FABP5
- FABP6
- FABP7
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| Hormone |
- peptide hormone: Follistatin
- Growth hormone binding protein
- Insulin-like growth factor binding protein
- IGFBP1
- IGFBP2
- IGFBP3
- IGFBP4
- IGFBP5
- IGFBP6
- IGFBP7
- Neurophysins
- steroid hormone: Sex hormone binding globulin/Androgen binding protein
- Transcortin
- Thyroxine-binding globulin
- Transthyretin
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| Metal/element |
- calcium
- Calcium-binding protein
- Calmodulin-binding proteins
- copper
- iron
- Iron-binding proteins
- Transferrin receptor
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| Vitamin |
- Retinol binding protein
- Transcobalamin
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| Pigment |
- Plant Light-Harvesting Complex
- Orange Carotenoid Protein
- Phycobiliprotein
- Photosynthetic Reaction Centers
- Phytochrome
- Rhodopsin
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| Other |
- Acyl carrier protein
- Adaptor protein
- Cholesterylester transfer protein
- F-box protein
- GTP-binding protein
- Latent TGF-beta binding protein
- Major urinary proteins
- Membrane transport protein
- Odorant binding protein
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Membrane transport protein: ion channels (TC 1A)
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Ca2+: Calcium channel
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| Ligand-gated |
- Inositol trisphosphate receptor
- Ryanodine receptor
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| Voltage-gated |
- L-type/Cavα
- N-type/Cavα2.2
- P-type/Cavα
- Q-type/Cavα2.1
- R-type/Cavα2.3
- T-type/Cavα
- α2δ-subunits
- β-subunits
- γ-subunits
- Cation channels of sperm
- Two-pore channel
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Na+: Sodium channel
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| Constitutively active |
- Epithelial sodium channel
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| Proton-gated |
- Amiloride-sensitive cation channel
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| Voltage-gated |
- Navα
- 1.1
- 1.2
- 1.3
- 1.4
- 1.5
- 1.6
- 1.7
- 1.8
- 1.9
- 7A
- Navβ
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K+: Potassium channel
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| Calcium-activated |
- BK channel
- SK channel
- IK channel
- KCa
- 1.1
- 2.1
- 2.2
- 2.3
- 3.1
- 4.1
- 4.2
- 5.1
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| Inward-rectifier |
|
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| Tandem pore domain |
- K2P
- 1
- 2
- 3
- 4
- 5
- 6
- 7
- 9
- 10
- 12
- 13
- 15
- 16
- 17
- 18
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| Voltage-gated |
- Kvα1-6
- 1.1
- 1.2
- 1.3
- 1.4
- 1.5
- 1.6
- 1.7
- 1.8
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-
-
-
-
- Kvβ
- KCNIP
- minK/ISK
- minK/ISK-like
- MiRP
- Shaker gene
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Miscellaneous
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| Cl−: Chloride channel |
- Calcium-activated chloride channels
- Anoctamin
- Bestrophin
- Chloride Channel Accessory
- CFTR
- CLCN
- CLIC
- CLNS
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| H+: Proton channel |
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| M+: CNG cation channel |
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| M+: TRP cation channel |
- TRPA (1)
- TRPC
- TRPM
- TRPML
- TRPN
- TRPP
- TRPV
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| H2O (+ solutes): Porin |
- Aquaporin
- Voltage-dependent anion channel
- General bacterial porin family
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| Cytoplasm: Gap junction |
- Connexin: A
- GJA1
- GJA3
- GJA4
- GJA5
- GJA8
- GJA9
- GJA10
- B
- GJB1
- GJB2
- GJB3
- GJB4
- GJB5
- GJB6
- GJB7
- C
- D
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By gating mechanism
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| Ion channel class |
- Ligand-gated
- Light-gated
- Voltage-gated
- Stretch-activated
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see also disorders
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Membrane proteins, carrier proteins: membrane transport proteins solute carrier (TC 2A)
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Ion pumps
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| Symporter, Cotransporter |
- Na+/K+,Cl−
- Na+/Pi3
- Na+/Cl−
- Na+/glucose
- Na+/I−
- Cl−/K+
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| Antiporter (exchanger) |
- Na+/H+
- Na+/Ca2+
- Na+/(Ca2+-K+) - Cl−/HCO−
3 (Band 3)
- Cl−-formate
- Cl−-oxalate
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see also solute carrier disorders
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Membrane transport protein: neurotransmitter transporters (TC 2.A.1.2)
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| Vesicular |
- Vesicular monoamine
- Vesicular acetylcholine
- Vesicular glutamate
- Vesicular GABA
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| Other |
- Monoamine
- Excitatory amino-acid transporter
- GABA transporter
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Membrane proteins, carrier proteins: membrane transport proteins ABC-transporter (TC 3A1)
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| A |
- A1
- A2
- A3
- A4
- A7
- A8
- A12
- A13
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| B |
- B1
- B2-3 (B2
- B3)
- B4
- B5
- B6
- B7
- B9
- B11
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| C |
- C1
- C2
- C3
- C4
- C5
- C6
- C7
- C8-9 (C8, C9)
- C10
- C11
- C13
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| D |
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| E |
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| F |
|
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| G |
- G1
- G2
- G4
- Sterolin (G5, G8)
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see also ABC transporter disorders
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Membrane transport protein: ion pumps, ATPases / ATP synthase (TC 3A2-3A3)
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| F-, V-, and A-type ATPase (3.A.2) |
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H+ (F-type)
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- H+ transporting, mitochondrial: ATP5A1
- ATP5B
- ATP5C1
- ATP5C2
- ATP5D
- ATP5E
- ATP5F1
- ATP5G1
- ATP5G2
- ATP5G3
- ATP5H
- ATP5I
- ATP5J
- ATP5J2
- ATP5L
- ATP5L2
- ATP5O
- ATP5S
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H+ (V-type)
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- H+ transporting, lysosomal: ATP6AP1
- ATP6AP2
- ATP6V1A
- ATP6V1B1
- ATP6V1B2
- ATP6V1C1
- ATP6V1C2
- ATP6V1D
- ATP6V1E1
- ATP6V1E2
- ATP6V1F
- ATP6V1G1
- ATP6V1G2
- ATP6V1G3
- ATP6V1H
- ATP6V0A1
- ATP6V0A2
- ATP6V0A4
- ATP6V0B
- ATP6V0C
- ATP6V0D1
- ATP6V0D2
- ATP6V0E
- ATP6V0E1
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A-ATPase
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found in Archea
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| P-type ATPase (3.A.3) |
- 3.A.3.1.1: Na+/K+ transporting: ATP1A1
- ATP1A2
- ATP1A3
- ATP1A4
- ATP1B1
- ATP1B2
- ATP1B3
- ATP1B4
- ATP1G1
- 3.A.3.1.2: H+/K+
- H+/K+ exchanging: ATP4A
- ATP4B
- 3.A.3.1.4: H+/K+ transporting, nongastric: ATP12A
- 3.A.3.2: Ca2+ (SERCA, PMCA, SPCA) / Ca2+ transporting: ATP2A1
- ATP2A2
- ATP2A3
- ATP2B1
- ATP2B2
- ATP2B3
- ATP2B4
- ATP2C1
- 3.A.3.5: Cu2+ transporting: ATP7A
- ATP7B
- 3.A.3.8.8: flippase: ATP8A2
- Mg2+ transporting: ATP3
- Class I, type 8: ATP8A1
- ATP8B1
- ATP8B2
- ATP8B3
- ATP8B4
- Class II, type 9: ATP9A
- ATP9B
- Class V, type 10: ATP10A
- ATP10B
- ATP10D
- Class VI, type 11: ATP11A
- ATP11B
- ATP11C
- type 13: ATP13A1
- ATP13A2
- ATP13A3
- ATP13A4
- ATP13A5
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see also ATPase disorders
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